Pairwise Alignments

Query, 607 a.a., excinuclease ABC subunit C from Pseudomonas simiae WCS417

Subject, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

 Score =  306 bits (784), Expect = 1e-87
 Identities = 191/548 (34%), Positives = 301/548 (54%), Gaps = 39/548 (7%)

Query: 11  LSTCSGRPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIAQVETTI 70
           +S     PG Y   +    ++YVGKAKNLK R++SYF K    PKT  LV  I ++E  +
Sbjct: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIV 63

Query: 71  TANETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFLSDGNFPRLSIHRGAKKQKGKYFG 130
           T NE EAL+LE TLIK++ P YNI L+D K+Y Y+++S+ NFPR+ I R  K +KGK++G
Sbjct: 64  TDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRN-KSKKGKFYG 122

Query: 131 PYPSAGAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCVGLVEPAEYAED 190
           P+ SA      L +L+KTF +R C++       RPCL++ IK C APC G +   +Y   
Sbjct: 123 PFTSAKERDYVLDVLKKTFKIRSCKNM----HKRPCLRHHIKNCTAPCSGDITSKDYLNQ 178

Query: 191 VRHSVMFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQDQQSMEGGTG- 249
           ++ +   L+G  ++L  EL   M + +  L FE A  +R++I+ + R++ +Q+++     
Sbjct: 179 IKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKY 238

Query: 250 DVDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEDVAE-VMAAFLGQYYVSSPE 308
           + DVI+     G   + + +V  G +   K F      + D  E     FL QYY    E
Sbjct: 239 NEDVISILEKSGKLHIMVFNVLKGTLFDRKYF------EFDYTENFFEEFLIQYY---SE 289

Query: 309 RDLPSELIVNVVHEDF---------PTLIEAIHELRGRELDISHRVRGTRARWQQLAVTN 359
            D+PSE+I++ + ++            L+E + + +G ++      +G + +   LA+ N
Sbjct: 290 NDVPSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKN 349

Query: 360 AEQALSARLANRQHVAARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGP 419
            E  ++           +  +L   L LD+ P  +EC+DISH SG +TV S V F    P
Sbjct: 350 LEIYVNGN-------EIKVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKP 402

Query: 420 IKSDYRRYNIEGVTAGDDYAAMHQALTRRFSKLKDGEGKLPDILLVDGGKGQLSMARDVL 479
            K +YRR+ I+ V+  DD+ ++ + + RR+SKL +   +LPD++++DGGKGQLS A   L
Sbjct: 403 DKKNYRRFKIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSEL 462

Query: 480 NELAVPDLILLGVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAIT 539
            +L +  + L+ +AK        E +Y     +   +K +  A   IQ+IRDEAHRFAI 
Sbjct: 463 RKLKL-KIPLISIAKRE------EEIYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAIN 515

Query: 540 GHRARRGK 547
            +R  R K
Sbjct: 516 YNRLLRKK 523