Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  231 bits (588), Expect = 4e-64
 Identities = 153/481 (31%), Positives = 253/481 (52%), Gaps = 5/481 (1%)

Query: 549  LLVTLGWVLYLRNLIHKRAQAEQALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYL 608
            +L  L   + L     ++  AE+ + +Q +    ++D TP+P+Y     G+ +  N  +L
Sbjct: 443  MLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFL 502

Query: 609  DVFGFKLEDVIGKTVVQTDTGNPPQAQSFHADYLSLMERGEPQIQDRVLKVPGGGVLTIY 668
            D+ G    +VI K   +        A+ F A +  L ++   Q  +  L    G    + 
Sbjct: 503  DLMGLYNNEVIDKEPQEIFPAEV--AERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREML 560

Query: 669  QWMLPYRDSNGAVVGMIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRT 728
             +   + D    V G++   +D++ER+ +  +L++AKE ADA ++AK  FLA MSHEIRT
Sbjct: 561  VYEASFSDRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRT 620

Query: 729  PMNAVIGMIELAQKNAEQGRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLSLEQ 788
            PMNA++GM  LA  N       +  +   + +++++L +I DILD +++E G L++    
Sbjct: 621  PMNAILGMAHLAL-NTPLDTTQRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERID 679

Query: 789  ANLHELLASVARVFEGLARDKGLLLQVELDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTA 848
             NL ++L +V  V    A++KG+   +++DP I   ++ DPLR  QV+ NL GNA+KFT+
Sbjct: 680  FNLDDVLDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTS 739

Query: 849  TGQVRLGAQSTPTLAGDHLSLRLCVEDTGIGISAEDQQRLFSPFIQGSNNDQSARSGSGL 908
             G++ L A+    L    ++LR  V+DTGIGI+ +    LF  F Q  N+      G+GL
Sbjct: 740  QGEIVLSAR-VSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGL 798

Query: 909  GLVISRNLCEMMGGQLHLSSVLGKGTRVDLTLTLATATATPVYAPAPPAPATHALNLLVV 968
            GL IS+ L E+MGGQ+ + S  GKG+  + ++      A  +   + P        +LVV
Sbjct: 799  GLSISKQLVELMGGQITVHSEEGKGSTFEFSVVCGLQDA-KMRDISQPVHGLADKRVLVV 857

Query: 969  DDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGYTLARDI 1028
            DD  + R +L   L+ +   +VT  +G E  +  Q   FD +  D NMP M+G  L   +
Sbjct: 858  DDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRV 917

Query: 1029 R 1029
            +
Sbjct: 918  K 918



 Score = 77.4 bits (189), Expect = 7e-18
 Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 26/234 (11%)

Query: 964  NLLVVDDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGYT 1023
            +LL+V+D   N+ +    L   G  +V A  G E     +   FD V+ D  MP+MDG T
Sbjct: 993  SLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGIT 1052

Query: 1024 LARDIRAQERQRGLVPCLLLGFTANAQPEETERCRQAGMDGCLFKPTGLDDLRTALASRT 1083
                IRA  R   L    ++  TANA   + ERC QAGM+  L KP  +D     L    
Sbjct: 1053 ATEHIRANPRWHSLP---IVAMTANAMAIDIERCLQAGMNDHLSKPIEVDKFYQVLRHFL 1109

Query: 1084 AAPEEKEV-----------------------VPVCDLSTLVALTGGDTAGLNELLAPLLD 1120
               +E+                         +   DL   +   GG+     E+L   +D
Sbjct: 1110 QVSDEQSFSSHSPNKPSASKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFID 1169

Query: 1121 SLAEDRLVLSTLRARTDFGKLHDLAHRVKGGARMVKSQALVACCETLEDVCERR 1174
            S  ++   ++ L    D+     +AH +KG A  +  +AL      +E   E++
Sbjct: 1170 SQVDELNSVTGLIEAQDWSSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQ 1223