Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  248 bits (634), Expect = 1e-69
 Identities = 206/628 (32%), Positives = 293/628 (46%), Gaps = 51/628 (8%)

Query: 563  IHKRAQAEQALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFKLEDVIGKT 622
            I +R + E  L      +S LI+     I V D   +++  N A   +F     DV  + 
Sbjct: 377  ITERKRDEDFLMATTSRLSALIESMQAGILVEDENRQIVLANQALGQLFEL---DVDPQE 433

Query: 623  VVQTDTGNPPQ-AQSFHADYLSLMERGEPQIQDR------VLKVPGGGVLT---IYQWML 672
            +V  D     Q  Q   AD    + R E  ++DR       +++  G VL    I  ++ 
Sbjct: 434  LVGVDCRLVLQHLQGLCADGARFVPRVEAVVEDRRAVLGEEIRLADGRVLERDYIPIYLF 493

Query: 673  PYRDSNGAVVGMIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNA 732
            P         G +  + D++ER+    +LQ+AKE A++ANRAK  FLA MSHEIRTPMN 
Sbjct: 494  PQVAQPEDYRGHLWLFRDITERKHAELELQQAKEAAESANRAKGEFLANMSHEIRTPMNG 553

Query: 733  VIGMIELAQKNAEQGRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLSLEQANLH 792
            ++GM +LA  +A      +D LE+   ++ ++L +I DILD ++IE G L L     +L 
Sbjct: 554  ILGMTDLALDSALTPE-QRDYLEMVKSSADALLVIINDILDFSKIEAGKLELEHIHFHLR 612

Query: 793  ELLASVARVFEGLARDKGLLLQVELDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTATGQV 852
            +LL    +  E  AR + L L+ E+   +    L DP R +QV+ NL+GNAIKFT  GQV
Sbjct: 613  QLLRETLKPLELRARQRSLTLRCEVPEEVADGYLGDPGRLRQVLINLVGNAIKFTEEGQV 672

Query: 853  RLGAQSTPTLAGDHLSLRLCVEDTGIGISAEDQQRLFSPFIQGSNNDQSARSGSGLGLVI 912
             +  ++   L      L   V DTGIGI A+ QQ +F  F Q  ++      G+GLGL I
Sbjct: 673  AVRVEARDGL------LHFAVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGTGLGLTI 726

Query: 913  SRNLCEMMGGQLHLSSVLGKGTRVDLTLTLATATATPVYAPAPPAPATHA----LNLLVV 968
               L  +MGG + + S  G+G+    T  L  A A P  +    A         L LLV 
Sbjct: 727  CTRLVRLMGGHMWVESDPGQGSTFHFTARL-EAVAGPAESGEADAGRGEVVLPPLRLLVA 785

Query: 969  DDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGYTLARDI 1028
            +D P N+ L+   L   GHR+  A++G +  A      FD V+ D  MP+M G    R I
Sbjct: 786  EDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGGLEATRRI 845

Query: 1029 RAQERQRGLVPCL-LLGFTANAQPEETERCRQAGMDGCLFKPTGLDDLRTAL-------- 1079
            RA E  RG    L ++  TANA   + E C +AGMDG + KP   D+  +A+        
Sbjct: 846  RAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMADVLPPER 905

Query: 1080 ---------------ASRTAAPEEKEVVPV--CDLSTLVALTGGDTAGLNELLAPLLDSL 1122
                           A+  AAP E     +  CD +  VA   GD      L+    D L
Sbjct: 906  LRQAGAAAAIPADGQAAVAAAPSESAPAALRRCDRAEAVARLEGDEELFAMLVKMFSDDL 965

Query: 1123 AEDRLVLSTLRARTDFGKLHDLAHRVKG 1150
                  L+   A  D   L   AH +KG
Sbjct: 966  PNYLQRLNAALAGQDMEALSREAHTLKG 993



 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 538 IIQGFGLAALLLLVTLGWVLYLRNLIHKRA-QAEQALSDQMRFMSVLIDGTPHPIYVRDR 596
           +++G  L A    + +G ++   N   +R  Q E+ + +  RF+  L D     +   D 
Sbjct: 220 VLRGQSLPAYHGSLEIGELVQALNRASRRLKQQEETIEENSRFLQSLTDALGEGVIATDA 279

Query: 597 QGRLMACNNAYLDVFGFKLEDVIGKTVVQT 626
           +GR    N     + G++ ++++GK V  T
Sbjct: 280 EGRCTFINAEGERMLGWRRQELLGKDVHHT 309