Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 839 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  270 bits (689), Expect = 5e-76
 Identities = 230/820 (28%), Positives = 370/820 (45%), Gaps = 53/820 (6%)

Query: 302  PRVKVAVLDKFMPLSFLDERGQFVGLSDEVLSRISLRTGLKFEMVHGNSLTRQIDEVSSG 361
            P ++V   D + P  F D  GQ VG   ++ S    +TG + +++      R    ++  
Sbjct: 35   PPLRVTSDDNYPPYIFRDPSGQPVGYLVDLWSLWEQKTGRRVQLI-ATDWGRAQRLMAEN 93

Query: 362  QADMLAVITPSVERAEKVRFTRPYLSNPYVLVARASDERLLTLEDMPGKRLAFIGGNSLG 421
            +AD++ +I  +  R     F++PY + P  + + +S   +   +++ G    F+ G  +G
Sbjct: 94   EADVIDMIFHTAARDALYEFSQPYANLPVGIYSHSSISGISNTDNLKG----FLIGVQVG 149

Query: 422  AQIARDYPGIQFVDVGNPEAAMDLVAKGSVDATIVSLISARYMIARNYRDRL----RITS 477
                 +  G    ++   +   +++A    +   + L     + A  Y  RL    +   
Sbjct: 150  DACIEELQGKGVTNLRQFKNYAEMIAAAMAEE--IKLFCLDQLPANYYLYRLDLQRQFRK 207

Query: 478  TIGTEPARIAFGVNRSQLELYSILEKALLSITPEEMDELSNRWRSEIIIDDSYWSSHRNV 537
            +      R      +      + +E+ +  I+ EE   L  +W    I    Y    R  
Sbjct: 208  SFDLYQGRFHRATRKGDTATLAAVERGMALISNEERAALEKKWMGSAIDYVPYMPYARYF 267

Query: 538  IIQGFGLAALLLLVTLGWVLYLRNLIHKRAQAEQALSDQMRFMSVLIDGTPHPIYVRDRQ 597
               G GLA LLL+   G  L++R L     +    L  Q   +  L+ G P P++++D  
Sbjct: 268  ---GLGLA-LLLVAGAGLALWVRVLQAAVKRRTAELERQRSHLHTLLRGIPDPLWLKDEA 323

Query: 598  GRLMACNNAYLDVFGFKLEDVIGKTVVQTDTGNPPQAQSFHADYLSLMERGEPQIQDR-V 656
            G  +ACN A+  + G   +++IG +    D  +  QA  F      ++  G PQ  +  +
Sbjct: 324  GVFIACNPAFERMMGRPEQEIIGCS--DYDFVSREQADFFRDKDRQVLVAGTPQSNEEWI 381

Query: 657  LKVPGGGVLTIYQWMLPYRDSNGAVVGMIAGWVDVSERQRLLGQ---------------- 700
             +  G G         P  +  G V+G++    D++ER+RL  +                
Sbjct: 382  TQADGSGQRLFETVKTPIVEPQGKVLGVLGVARDITERKRLEAEVSNYSHHLEELVAERT 441

Query: 701  --LQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQGRVDQDALEVAS 758
              L  A++ A+AAN AK+ FLA MSHEIRTPMNA+IG+  + +K  E     QD L+   
Sbjct: 442  EELARARDAANAANVAKSAFLANMSHEIRTPMNAIIGLTHILKKG-EPSPQQQDRLDKID 500

Query: 759  MASRSMLELIGDILDIARIETGHLSLSLEQANLHELLASVARVFEGLARDKGLLLQVELD 818
             A+  +L +I DILD+++IE   L L  +   L  +++ +  +    AR K ++L+ E+D
Sbjct: 501  DAASHLLSIINDILDLSKIEAERLVLEEQPVELGRIVSHIFSMLAEGARKKDIVLKSEVD 560

Query: 819  PMIDRAVLIDPLRFKQVVSNLLGNAIKFTATGQVRLGAQSTPTLAGDHLSLRLCVEDTGI 878
            P+    +L DP R  Q + N   NA+KFT  G V L  +       D + LR  VEDTGI
Sbjct: 561  PL-PPYLLGDPTRLTQAILNYASNAVKFTEWGSVTLRIKVLELTPAD-VFLRFEVEDTGI 618

Query: 879  GISAEDQQRLFSPFIQGSNNDQSARSGSGLGLVISRNLCEMMGGQLHLSSVLGKGTRVDL 938
            GI+ E Q  LF+PF Q   +      G+GLGLVI+R L ++MGG   + S LG G+    
Sbjct: 619  GIAPEVQPLLFAPFQQADGSTSRRFGGTGLGLVITRRLAQIMGGDAGVDSRLGFGSTFWF 678

Query: 939  TLTL---ATATATPVYAPAPPAPATHALN------LLVVDDYPANRLLLARQLSFLGHRI 989
            +  L       A P   P P +     L       +L+ +D   N+ +    L + G R+
Sbjct: 679  SARLKLGEARAALPEDGPRPDSAEGELLQHYRGTPILLAEDDSINQEVARELLEYAGLRV 738

Query: 990  VTAEDGAEGFALWQDG--QFDGVITDSNMPIMDGYTLARDIRAQERQRGLVPCLLLGFTA 1047
              A DG E  A  + G   +  V+ D  MP MDG    R IR   R  G+    ++  TA
Sbjct: 739  DIAADGNEAVACLERGTTPYALVLMDMQMPGMDGLEATRHIR---RLPGMESLPIISMTA 795

Query: 1048 NAQPEETERCRQAGMDGCLFKPTGLDDLRTALASRTAAPE 1087
            NA  E+ ERC +AGM+  + KP   + L   L      P+
Sbjct: 796  NAFGEDRERCLEAGMNDFVPKPVNPEVLYAMLLKWLPRPQ 835