Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  246 bits (628), Expect = 9e-69
 Identities = 180/525 (34%), Positives = 263/525 (50%), Gaps = 21/525 (4%)

Query: 567  AQAEQALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFKLEDVIGKTVVQT 626
            A A +  S Q+  +  ++D  P+P++ +D +GR + CN AY D FG     ++GKTV + 
Sbjct: 431  ADAREESSRQLVLLQAIMDSMPNPVFFKDAEGRFLGCNRAYEDTFGVGRGQIVGKTVREL 490

Query: 627  DTGNPPQAQSFHADYLSLMERGEPQIQDRVLKVPGGGVL---TIYQWMLPYRDSNGAVVG 683
               +  + Q   A   +++  G   +  R L++P    L   T+Y W   +   +G   G
Sbjct: 491  PFLSEEEKQELQAVSEAIIRDGI--MMHRELQLPFADGLRHDTLY-WANGFSREDGTPGG 547

Query: 684  MIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKN 743
            M+   VD+SER+ +  +L+ A+  A+ A  AK+ FLA MSHEIRTPMNA+IGM  LA K 
Sbjct: 548  MVGVVVDISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMK- 606

Query: 744  AEQGRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLSLEQANLHELLASVARVFE 803
             E     +D +     A+ S+L +I DILD ++IE G LSL     +L ++L +V+ +  
Sbjct: 607  TELTPKQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLG 666

Query: 804  GLARDKGLLLQVELDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTATGQVRLGAQSTPTLA 863
              A +KGL L   ++      ++ DPLR  Q+++NL+ NAIKFT  GQ+ L  +     A
Sbjct: 667  LKANEKGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQ-A 725

Query: 864  GDHLSLRLCVEDTGIGISAEDQQRLFSPFIQGSNNDQSARSGSGLGLVISRNLCEMMGGQ 923
            GD + L+  +ED GIG+S E    LF  F Q   +      G+GLGL ISR L EMMGG 
Sbjct: 726  GDRVKLQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGT 785

Query: 924  LHLSSVLGKGTRVDLTLTLATA--TATPVYAPAPPAPATHALNLLVVDDYPANRLLLARQ 981
            +   S LG+G+    T     A   A P   PA  A     L +LV DD  A R +L   
Sbjct: 786  IWADSTLGEGSTFCFTAWFGRAEELARPRTLPASLA----GLRVLVADDNGAAREILGEA 841

Query: 982  LSFLGHRIVTAEDGAEGFALWQDGQ-----FDGVITDSNMPIMDGYTLARDIRAQERQRG 1036
            L  L  R      GAE  A   + Q     +  +  D  MP +DG +    ++ Q   + 
Sbjct: 842  LRHLDLRPDLVASGAEALAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQ-QALPQA 900

Query: 1037 LVPCLLLGFTANAQPEETERCRQAGMDGCLFKPTGLDDLRTALAS 1081
              P +++  TA  Q E   +    G+ G L KP     L   L S
Sbjct: 901  QWPRVVM-VTAYDQEELRRQTENLGICGILVKPVSASTLFDVLVS 944



 Score = 77.8 bits (190), Expect = 6e-18
 Identities = 69/249 (27%), Positives = 103/249 (41%), Gaps = 22/249 (8%)

Query: 945  ATATPVYAPAPPAPATHALNLLVVDDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQ- 1003
            A ATP++  AP       + +L+ +D   N+ +    L  +G ++  A DG +   L + 
Sbjct: 951  APATPLHIAAPQT-RIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLER 1009

Query: 1004 --DGQFDGVITDSNMPIMDGYTLARDIRAQERQRGLVPCLLLGFTANAQPEETERCRQAG 1061
              D  FD V+ D  MP +DGY     +R Q+R   L    +L  TA+A PEE ERC   G
Sbjct: 1010 SPDDSFDLVLMDLQMPHLDGYDATERLRCQQRFAHLP---ILAMTAHAMPEERERCLAIG 1066

Query: 1062 MDGCLFKPTGLDDLRTAL---------ASRTAAPEEKE------VVPVCDLSTLVALTGG 1106
            M+  L KP     L   L         AS  A    K+       +P  + +  +A   G
Sbjct: 1067 MNDHLAKPIDPTALAATLARWYEERPGASAPAPTPAKDGTDALPPIPGVNTTQGLARMAG 1126

Query: 1107 DTAGLNELLAPLLDSLAEDRLVLSTLRARTDFGKLHDLAHRVKGGARMVKSQALVACCET 1166
            + A    LL   +D+       +    A  D      LAH +KG A  + ++ L      
Sbjct: 1127 NQALYRRLLLRFVDTQTGTGEHIRQALADGDITAAEHLAHTLKGVAGNIGAEVLQQKATA 1186

Query: 1167 LEDVCERRD 1175
            L+    R D
Sbjct: 1187 LDQALRRND 1195