Pairwise Alignments

Query, 1204 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  222 bits (565), Expect = 2e-61
 Identities = 164/542 (30%), Positives = 260/542 (47%), Gaps = 28/542 (5%)

Query: 555  WVLYLRNLIHKRAQAEQALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFGFK 614
            W  Y+ ++  +++  E+    +  F + L DG    I   D +G ++ CN  + +  G  
Sbjct: 882  WNGYVMDVTERKSIEEELAVSEAHFKA-LFDGATIGIVNVDIKGLILDCNYQFCEDMGLS 940

Query: 615  LEDVIGKTVVQTDTGNPPQAQSFHADYLSLME------RGEPQIQDRVLKVPGGGVLTIY 668
             +++    +   D  +        A +  L+E      RGE     R    P G  L + 
Sbjct: 941  RDELRSTPIF--DVLSAQDKDVAKAQFKELVEGKIDHYRGE-----RSFVRPSGEPLWMT 993

Query: 669  QWMLPYRDSNGAVVGMIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRT 728
              +    DS       +   VD++E + L  +L  AK+EADAA++AK  FLA MSHEIRT
Sbjct: 994  VNVSTLLDSQNQFESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRT 1053

Query: 729  PMNAVIGMIELAQKNAEQGRVDQDALEVASMASRSMLELIGDILDIARIETGHLSLSLEQ 788
            PMNA+IGM +L  +  +  +  ++ LE    AS+S+L +I DILD ++IE G L +    
Sbjct: 1054 PMNAIIGMSQLCLQT-QLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVS 1112

Query: 789  ANLHELLASVARVFEGLARDKGLLLQVELDPMIDRAVLIDPLRFKQVVSNLLGNAIKFTA 848
              L  +L  ++ +F   A  K + L   + P + R +L DPLR  QV+ NL+ NAIKFT 
Sbjct: 1113 FQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTE 1172

Query: 849  TGQVRLGAQSTPTLAGDHLSLRLCVEDTGIGISAEDQQRLFSPFIQGSNNDQSARSGSGL 908
             G+V L + S      D + LR  V D+GIG++ E Q +LF  F Q   +      G+GL
Sbjct: 1173 RGEVLL-SLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGL 1231

Query: 909  GLVISRNLCEMMGGQLHLSSVLGKGTRVDLTLTLATATATPVYAPAPPAPATHALNLLVV 968
            GL IS+ L E+MGG + + S LG G+    T+ L  ++   ++           +++LV 
Sbjct: 1232 GLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSGQKLFV----GQELDGMSILVA 1287

Query: 969  DDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGYTLARDI 1028
            DD    R ++   L  +G  + T   G E        ++   + D  MP +DG   A+ I
Sbjct: 1288 DDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQI 1347

Query: 1029 RAQERQRGLVPCLLLGFTANAQPEETERCRQAGMDGCLFKPTG----LDDLRTALASRTA 1084
            + Q +     P +L+  +A+A  +   +  Q G+ G + KP      LD +  AL     
Sbjct: 1348 KQQTKN---APRILM-VSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRSGI 1403

Query: 1085 AP 1086
             P
Sbjct: 1404 LP 1405



 Score = 51.6 bits (122), Expect = 6e-10
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 965  LLVVDDYPANRLLLARQLSFLGHRIVTAEDGAEGFALWQDGQFDGVITDSNMPIMDGYTL 1024
            +L+V+D   N  +    L  +G  +  A +G           FD V+ D  MP+MDGY  
Sbjct: 1426 ILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQA 1485

Query: 1025 ARDIRAQERQRGLVPCLLLGFTANAQPEETERCRQAGMDGCLFKPTGLDDLRTALASRTA 1084
             + IR +     L    ++  TANA   + E C +AGM+  + KP  ++ L   L     
Sbjct: 1486 TKAIRQRPE---LAQLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTLLKYLG 1542

Query: 1085 AP 1086
            AP
Sbjct: 1543 AP 1544