Pairwise Alignments

Query, 496 a.a., LuxR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 953 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score = 56.2 bits (134), Expect = 5e-12
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 20/228 (8%)

Query: 133 DATEWASAE-----QRFEKTFNANPAPAVICRLSDLRYIKVNQGFLEMTGYNRDQVIGKS 187
           DA + A A+     Q       A P+P +  + +  RY+  N+ FL   G  R +++GKS
Sbjct: 263 DALQQADAQLQEHVQFMHTLIEAIPSP-LFYKDAQGRYVGCNEAFLTYLGKERHELLGKS 321

Query: 188 VYELDVLEQAERKDLAIQRL--GEGATIPQMQAELRLPEGGSKLVIVAGQPLDMNEED-- 243
           VY+L   E A+    A ++L    G  + + QA       GSK  ++  +   M+ E   
Sbjct: 322 VYDLAPKELADIYAAADRQLFDNPGKQVYESQA---CYADGSKHDVIYNKATFMDAEGRV 378

Query: 244 -CMLFSFMDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCSASNRQVVDINEAFMSITG 302
             ++   +D+  R++ E  LR +    AK F  +    LV  A N  +  +N AF   TG
Sbjct: 379 AGLVGVMVDITERKRQEEELRLA----AKVFDTSNEAFLVTDADN-NIRSVNRAFCETTG 433

Query: 303 YTSEELIGKSIEDISFIDSPQA-GAQLFTTLEKAGNLDGQDLKVRKKG 349
           Y++EE++G++   +S     +    Q++  L   G   G+    RK G
Sbjct: 434 YSAEEVLGRNPRLLSSGHHDKTFYRQMWEALNSQGYWQGEIYDRRKSG 481



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 69/291 (23%), Positives = 116/291 (39%), Gaps = 34/291 (11%)

Query: 190 ELDVLEQAERKDLAIQRLGEGATIPQMQAELRLPEGGSKLVIVAGQPLDMNEEDCMLFSF 249
           +L V  + +R   A +RLGEG          R+   G   +    +  D  E    L   
Sbjct: 210 DLWVTRRLQRISAAARRLGEG------HLNERIGMAGDDEIATLARQFD--ETAASLARK 261

Query: 250 MDLEPRRKAEIALRQSEERFAKSFRLTPVPTLVCSASNRQVVDINEAFMSITGYTSEELI 309
            D    ++A+  L++  +         P P     A  R V   NEAF++  G    EL+
Sbjct: 262 QDA--LQQADAQLQEHVQFMHTLIEAIPSPLFYKDAQGRYV-GCNEAFLTYLGKERHELL 318

Query: 310 GKSIEDISFIDSPQAGAQLFTTLEKAGNLDGQDLKVRKK-----GNEVIDCVVSADTVII 364
           GKS+ D++    P+  A ++   ++    D    +V +           D + +  T + 
Sbjct: 319 GKSVYDLA----PKELADIYAAADRQ-LFDNPGKQVYESQACYADGSKHDVIYNKATFMD 373

Query: 365 ED--VPCYLLVMMNITERKRSELELVAAIEEVMQDASWFSQTLIEKLANAKSVNSPNKPN 422
            +  V   + VM++ITERKR E EL  A +  + D S  +  + +   N +SVN      
Sbjct: 374 AEGRVAGLVGVMVDITERKRQEEELRLAAK--VFDTSNEAFLVTDADNNIRSVNRAFCET 431

Query: 423 IAYTDLTARERDVLG----LICEGLADKEIASRLTLAPNTVRNHVATVYSK 469
             Y+       +VLG    L+  G  DK    ++  A N+       +Y +
Sbjct: 432 TGYS-----AEEVLGRNPRLLSSGHHDKTFYRQMWEALNSQGYWQGEIYDR 477