Pairwise Alignments
Query, 1021 a.a., ACR family transporter from Pseudomonas simiae WCS417
Subject, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056
Score = 281 bits (719), Expect = 2e-79
Identities = 256/1035 (24%), Positives = 453/1035 (43%), Gaps = 70/1035 (6%)
Query: 7 LSDWALKHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQEETLKQ 66
LSD ++K L + + GV S+ L E P + + TR+ GA+ Q
Sbjct: 3 LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
Query: 67 VTDRIEKKLEELDALDYVKSYTRPGESTVFVFLKDTTSAKAIPEIWYQVRKKIDDIRG-- 124
+T +E +L + +D + S +R G S + V E+ Y + + DIR
Sbjct: 63 ITSVLEDQLAGISGIDEITSVSRNGMSRITVTF----------ELGYDLNTGVSDIRDAV 112
Query: 125 -----TFPQGLQGPSFNDEFGDVFGSVYA-FTGDGLSMRQLRDYVEQVRAEIRS-VPGLG 177
+ P+ P G SVY + + QL DY+E+V + S + G+
Sbjct: 113 ARAQRSLPEEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVS 172
Query: 178 KVEMIGQQDEVIYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSG 237
V++ G +V+Y+ +A G+ + +L +N +P G + +SVRT+
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTAR 232
Query: 238 QFASEKDLANVNL-RLNDRF-YRLADIADISRGYVDPARPMFRFNGKPAIGLAIAMQKGG 295
+ S +D + + R +D L D+AD+ G + F+ +G + + I Q
Sbjct: 233 GYQSAEDFEYLVVKRASDGTPIYLKDVADVFIG-AENENSTFKSDGIVNVSMGIVPQSDA 291
Query: 296 NIQSFGKALHERMDELTADLPVGVGVHKVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFI 355
N K +HE +D++ LP G + D +E ++ S LF +V++V +I
Sbjct: 292 NPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYI 351
Query: 356 SLG-MRAGLVVACSIPLVLALVFVFMEYSGITMQRVSLGALIIALGLLVDDAMITVEMMI 414
+G +RA L+ A ++P+ L F+ Y G ++ ++L ALI+++GL+VDDA++ VE +
Sbjct: 352 FIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIF 411
Query: 415 TRLEKGETKEQAATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAV-IAVA 473
+E+GE AA F ++ TLV V F+PI G FT F+V +A+A
Sbjct: 412 HHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVG-LLFTEFSVLLAMA 470
Query: 474 MLVSWVVAVLFAPVIGVHILSANVKPHNAEP------GRIGRAFNGGMLWAMRNRWWAIG 527
++ S ++A+ PV+G +L ANVKP R+ + + A+R RW A
Sbjct: 471 VIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPV 530
Query: 528 ITVALFVASVFSMQFVQNQFFPSSDRPELLVDLNLPQNASINETRKAVDRLEAIIKDDPD 587
+ A S MQ V Q PS DR + + S N +D +E
Sbjct: 531 VIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVE-------- 582
Query: 588 IARWSTYIGQGAIRFYLPLDQQLENPYYAQ--------LVIVSKGLEERGELIARLQKRL 639
R +GQG ++ + +++P + ++++ + +R ++
Sbjct: 583 -QRLMPLLGQGFLKSF-----SIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQV 636
Query: 640 RDDFVGIGSY-VQPLEMGPPVG--RPIQYRVSGKDTDQVRKHAIELATLLDKNSHLGEII 696
R GI V P G G P+Q+ + G D +++ A +L +K+ +
Sbjct: 637 RKALAGIPDVRVFPFMPGFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGAD 696
Query: 697 YDWNEPGKVLRIDIAQDKARQLGLSSEDVAQLMNSVVSGASVTQVHDDIYLINVVGRAED 756
D++E L + I + +A +LG+S + ++ + ++ G VT + +V R ++
Sbjct: 697 IDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDE 756
Query: 757 AERGTPETLQNLQIVTPNGTSIPLLAFATVRYELEQPLVWRRDRNPTITIKASVRDEM-- 814
L + + T G + L + + ++ ++TI A++
Sbjct: 757 NSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTL 816
Query: 815 -QPTDLVKQLKPEIDKFSAGLPVGYKVATGGTVEESGKAQGPIAKVVPLMLFLMATFLMI 873
Q D + Q EI LP V+ G ++ + Q +A V L L + L
Sbjct: 817 GQALDFLDQKAQEI------LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAA 870
Query: 874 QLHSVQKMFLVASVAPLGLIGVVLALIPTGTPMGFVAILGILALIGIIIRNSVILVTQIH 933
Q S +V P+G+ G L L G M + +G++ LIG++ +N +++V +
Sbjct: 871 QFESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN 930
Query: 934 EYEVAGYTPWDAVVEATEHRRRPILLTAAAASLGMIPIAREVFWGPMAYAMIGGII---- 989
+ G A+++A+ R RPIL+TA G IP+ G + +G +I
Sbjct: 931 QLRDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGM 990
Query: 990 -IATLLTLLFLPALY 1003
ATL+TLL +PA+Y
Sbjct: 991 GFATLVTLLVIPAMY 1005
Score = 51.2 bits (121), Expect = 4e-10
Identities = 94/485 (19%), Positives = 190/485 (39%), Gaps = 64/485 (13%)
Query: 54 RWPGATQEETLKQVTDRIEKKLEELDALDYVKSYT--------RPGESTVFVFL------ 99
R AT + D +E++L L ++KS++ G+ T FV +
Sbjct: 564 RGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWN 623
Query: 100 -KDTTSAKAIPEIWYQVRKK---IDDIRG-TFPQGLQGPSFNDEFGDVFGSVYAFTGDGL 154
+ T+ +A+ QVRK I D+R F G +G S N+ V G G
Sbjct: 624 DRTVTAQEALS----QVRKALAGIPDVRVFPFMPGFRGGS-NEPVQFVLG--------GS 670
Query: 155 SMRQLRDYVEQVRAEIRSVPGLGKVEM-IGQQDEVIYLNFSTRKLAALGIDQRQVVQSLQ 213
+L+ + E++ E P + ++ ++ + + ++ A LGI + + +L+
Sbjct: 671 DYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLE 730
Query: 214 SQNAVTPAGVIEAGPERISVRTSGQ---FASEKDLANVNLRLN-------DRFYRLADIA 263
E V G F + DL+ + +R D R+ ++A
Sbjct: 731 VMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVA 790
Query: 264 DISRGYVDPARPMFRFNGKPAIGLAIAMQKGGNIQSFGKALHERMDELTADLPVGVGVHK 323
R + +N + ++ + ++ G + L ++ E+ LP + V
Sbjct: 791 SAIR--------LAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI---LPNDISVSY 839
Query: 324 VSDQAEVVEEAVGGFTSALFEAVIIVLVVSFISLGMRAG-----LVVACSIPLVLALVFV 378
+ + E S++ + L+V+++ L + LVV ++P+ + F+
Sbjct: 840 SGESKDFKENQ-----SSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFL 894
Query: 379 FMEYSGITMQRVSLGALIIALGLLVDDAMITVEMMITRLEKGETKEQAATYAYTSTAFPM 438
+ G M S +I+ +G++ + ++ VE ++G E+A A P+
Sbjct: 895 GLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPI 954
Query: 439 LTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWVVAVLFAPVIGVHILSANVK 498
L T+AG +P+ ++ + E + VI M + +V +L P + I +
Sbjct: 955 LMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQA 1014
Query: 499 PHNAE 503
P + E
Sbjct: 1015 PGHVE 1019