Pairwise Alignments

Query, 1021 a.a., ACR family transporter from Pseudomonas simiae WCS417

Subject, 1026 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  343 bits (880), Expect = 4e-98
 Identities = 250/1000 (25%), Positives = 472/1000 (47%), Gaps = 23/1000 (2%)

Query: 21   LMFVALLMGVFSYMN-LGREEDPSFTIKTMVIQTRWPGATQEETLKQVTDRIEKKLEELD 79
            L+   LL+  F  M+ L R EDP  T +   + T +PGA+ E     VT+ +E +L  L+
Sbjct: 14   LVIALLLVAGFGAMSSLPRTEDPHITNRFASVITPYPGASAERVEALVTEVLENQLRRLE 73

Query: 80   ALDYVKSYTRPGESTVFVFLKDTTSAKAIPEIWYQVRKKIDDIRGTFPQGLQGPSFNDEF 139
             +  ++S +RPG S + + LKDT +      +W + R  + D R + P  +Q P+ +D+ 
Sbjct: 74   EIKLIQSTSRPGISVIQLELKDTVTDT--DPVWSRARDLLADARNSLPDDIQTPTLDDQV 131

Query: 140  GDVFGSVYAFTGDGLSMRQ---LRDYVEQVRAEIRSVPGLGKVEMIGQQDEVIYLNFSTR 196
            G  + ++ +   +  S  +   L  Y +++++ +R + G   V++ G  +E I +     
Sbjct: 132  GYAYTAILSLVWNDSSQPRVDMLNRYAKELQSRLRLLAGTDFVKLYGAPEEEILVQLDGY 191

Query: 197  KLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFASEKDLANVNLRLND-- 254
            K++ L +    +   L+S ++   AG I     R  V  SG+  S+  +  V L+++   
Sbjct: 192  KMSQLQLTPGTIANILRSADSKIAAGEINNNHFRALVEVSGELDSQSRIRQVPLKVDSDG 251

Query: 255  RFYRLADIADISRGYVDPARPMFRFNGKPAIGLAIAMQKGGNIQSFGKALHERMDELTAD 314
            +  RL DIA ISR    PA  +   +G+  + +A  M     +  +   + + +DE   D
Sbjct: 252  QIIRLGDIATISRQPKSPADSIGLVDGEQGVFVAARMLNNTRVDIWQGQVKQLVDEFNID 311

Query: 315  LPVGVGVHKVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFISLGMRAGLVVACSIPLVLA 374
            LP  + V  + +Q     E +GG    L +  +I+L V  ++LG+R  ++VA S+PL   
Sbjct: 312  LPANIKVEWLLEQNSYTSERLGGLVINLIQGFVIILSVLLLTLGLRNAVIVAISLPLTAL 371

Query: 375  LVFVFMEYSGITMQRVSLGALIIALGLLVDDAMITVEMMITRLEKGETKEQAATYAYTST 434
                 M+Y G+ + ++S+  L++ALG++VD+A++ V+ +  R ++G ++  A T A    
Sbjct: 372  FTLACMKYIGLPIHQMSVTGLVVALGIMVDNAIVIVDAIAQRRQQGMSRLNAVTEALHHL 431

Query: 435  AFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWVVA-VLFAPVIGVHIL 493
              P+   T+ T+  F PI L   + GE+   +   +  A+  S++++  L A + G   L
Sbjct: 432  WLPLAGSTITTILAFAPIVLMPGATGEFVGGIAMAVMFALFGSYLISHTLIAGLAGRFSL 491

Query: 494  SANVK---PHNAEPGRIGRAFNGGMLWAMRNRWWAIGITVALFVASVFSMQFVQNQFFPS 550
                     H      +   F   + +A+     +  +   + +   ++   +  QFFP 
Sbjct: 492  EGKNPIWYQHGINLPLVSGYFQASLRFALNRPRLSAILIGTIPLLGFYASGKMTEQFFPP 551

Query: 551  SDRPELLVDLNLPQNASINETRKAVDRLEAIIKDDPDIARWSTYIGQGAIRFYLPLDQQL 610
            SDR    ++L L  + S+  T   V  ++  +     I +    +G     FY  L Q+ 
Sbjct: 552  SDRDMFQIELYLAPHVSLENTLSQVYLMDKQLHQIEGITQVDWVVGGNTPSFYYNLTQRQ 611

Query: 611  EN-PYYAQLVIVSKGLEERGELIARLQKRLRDDFVGIGSYVQPLEMGPPVGRPIQYRVSG 669
            +    YAQ +I +   E    LI  LQ+R    F      V+ LE GPP   P++  + G
Sbjct: 612  QGATNYAQAMIKTIDFERANALIPVLQQRFDKAFPEAQVLVRKLEQGPPFNAPVELMIFG 671

Query: 670  KDTDQVRKHAIELATLLDKNSHLGEIIYDWNEPGKVLRIDIAQDKARQLGLSSEDVAQLM 729
             D + +R    E+  +L     +       +     + + + +D +   GLS  ++A+ +
Sbjct: 672  PDLETLRTLGDEIRHILAATPDVIHTRATLSAGSPKVLLQVNEDASLISGLSLTNIARQV 731

Query: 730  NSVVSGASVTQVHDDIYLINVVGRAEDAERGTPETLQNLQIVTPNGTSIPLLAFATVRYE 789
                +G     V +    + +  R  +  R     L  +Q++TP+GT++PL A +    +
Sbjct: 732  QMSTTGVIGGSVLEQTESLPIRVRLGENSREQASRLSEIQLMTPSGTAVPLSALSHNEVQ 791

Query: 790  LEQPLVWRRDRNPTITIKASVRDEMQPTDLVKQLKPEIDKFSA-GLPVGYKVATGGTVEE 848
            + +  + RR+     TI+A +   + P  ++  +K   DK +A  LP GY++  GG   +
Sbjct: 792  VSRGAIPRRNGQRVNTIEAYIVSGVLPAQVLNDVK---DKVAAIKLPAGYRIEIGGESAK 848

Query: 849  SGKAQGPIAKVVPLMLFLMATFLMIQLHS--VQKMFLVASVAPLGLIGVVLALIPTGTPM 906
              +A G +   + L++ L+   +++  +S  +  + L++++   GL   +LA+   G P 
Sbjct: 849  RNEAIGNLLSNIILVVTLLLATVVLSFNSFRLTAIILLSALQSAGL--GLLAVFVFGYPF 906

Query: 907  GFVAILGILALIGIIIRNSVILVTQIHEYEVAGYTPWDAVVEATEHRRRPILLTAAAASL 966
            GF  I+ +L L+G+ I  +++++ ++ E   A       +V       R I  T      
Sbjct: 907  GFPVIIALLGLMGLAINAAIVILAELEELPAARMGDKAVIVSTVSSCGRHISSTTITTVG 966

Query: 967  GMIP--IAREVFWGPMAYAMIGGIIIATLLTLLFLPALYV 1004
            G IP  IA   FW P A A+ GG ++ TLL+L+++P +Y+
Sbjct: 967  GFIPLIIAGGGFWPPFAIAIAGGTLLTTLLSLVWVPTMYL 1006