Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  445 bits (1144), Expect = e-129
 Identities = 253/653 (38%), Positives = 376/653 (57%), Gaps = 23/653 (3%)

Query: 2   RLYLCEKPSQAKDIAAVLGASRRGD-GCW-LGNGVTVTWCIGHLLETAPPDAYDEKYKRW 59
           RL++ EKPS A+ IA  L    + + GC    NG  VTWCIGHLLE   PDAYDE+YK+W
Sbjct: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62

Query: 60  VLADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRY 119
            +ADLPI+PE+W++R +  ++ Q   V++LL EA +++ A D DREG+++  E++++C+ 
Sbjct: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122

Query: 120 ----RGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFT 175
               +  +QRL +S L+ +++++AL  L+   E   L  SAL RSRADWL GMNMSR +T
Sbjct: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182

Query: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERIT----FTA 231
           LLG+++GYQGVL VGRVQTP L LVV RD  I  F+P  Y+ +D  + ++  T      A
Sbjct: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242

Query: 232 QWRAAEDAC----DDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGT 287
           +W+ +E AC    D++GR  + +L  + A  + N   A + +   ++ ++ APLP+ L  
Sbjct: 243 RWKPSE-ACLPWQDEEGRVTNRKLVDNVASRIANQP-ATVTESEQDQTKQAAPLPYSLSA 300

Query: 288 LQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADA 347
           LQ   +K+    AQ+ LD+ QSLYE HK+ITYPRSDC YLP    ++AP ++AA+A    
Sbjct: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360

Query: 348 AVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQF 407
            +   +   +   RS+AWND+KV AHH IIPT     V  L+G    VY LI  +YL QF
Sbjct: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420

Query: 408 LPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQG 467
            P   Y   +  F+ AG    A G+ ++  GWK      L   +  +      +P L  G
Sbjct: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-----VLTGQQDEQEECVDKVPPLPVG 475

Query: 468 QDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAG 527
                 +  +K   T+PP+ FTE  L++AM  +A+ V D  LK+ L++T G+GTEATRAG
Sbjct: 476 IVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAG 535

Query: 528 IIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEE 587
           I+  L  RG L ++ K + +TPA   LI A+P     P  TA WE  L  +     + + 
Sbjct: 536 ILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQP 595

Query: 588 FVAKQAAWMSKQVARCNGMRMTITGPASPAGRGATPWKKKRKSAPRKTAASPK 640
           F+      + + + +     + ++  A PA   + P  K+ + AP+  A + K
Sbjct: 596 FMQTLQGRLEQLIEQVQVAPVPVSLQALPA--VSKPAFKRTRRAPKSKARTYK 646