Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 898 a.a., type I DNA topoisomerase from Synechocystis sp000284455 PCC 6803

 Score =  149 bits (375), Expect = 7e-40
 Identities = 168/611 (27%), Positives = 262/611 (42%), Gaps = 78/611 (12%)

Query: 2   RLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAP-----PDAYDEKY 56
           +L + E P++A+ I   L    R           V   +GH+ +        P AY  K 
Sbjct: 3   KLVIVESPTKARTIRNYLPQDYR-----------VEASMGHVRDLPASAEEVPAAY--KD 49

Query: 57  KRWVLADLPIVPEKWKMRVKPKTASQFKAVKRL---LGEAQELVIATDADREGEMIAREL 113
           K W    + +      + V PK  S+ K VK L   L  A E+++ATD DREGE I+  L
Sbjct: 50  KSWANLGVNVEDHFSPLYVIPK--SKKKVVKELQTALKNADEVILATDEDREGESISWHL 107

Query: 114 VEHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRL 173
           ++  + + PI+R+    +   +IR AL   +   E  +L H+   R   D L+G  +S  
Sbjct: 108 LQLLQPKVPIKRMVFHEITQEAIRSALENCRDIDE--NLVHAQETRRILDRLVGYTLS-- 163

Query: 174 FTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQW 233
             LL ++  +   L  GRVQ+  +RL+V R+R+   F    YW +  +L+  +  F A+ 
Sbjct: 164 -PLLWKKIAWG--LSAGRVQSVAVRLIVQRERARRAFKTAGYWDLKAELEQNKNPFQAKL 220

Query: 234 RAAEDACDDQGRCLDPQ---LARDAADAMRNAATARLVKLR----------TER---MRE 277
                     G   DP    L  D    + + A A  +K R          TE    +R+
Sbjct: 221 MTLGGTKLANGSDFDPNTGALLPDKQVVVLDEAQAIALKERLTGKPWAVVNTEEKPGVRK 280

Query: 278 VAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPK 337
            +P PF   TLQ+  ++KLG+ A++T+ +AQ LYE    ITY R+D      S H     
Sbjct: 281 PSP-PFTTSTLQQEANRKLGISARDTMRVAQKLYE-EGYITYMRTD------SVHLSDQA 332

Query: 338 ILAALARADAAVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTG---KHRA 394
           + AA         +     + ++ +     A+  AH  I P G    +   TG   +  A
Sbjct: 333 VTAARNCVQQMYGKEYLSPQPKQYTTKSKGAQ-EAHEAIRPAGTEFRIPNQTGLKDRELA 391

Query: 395 VYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGRE 454
           +Y LI  R +A  + +    +            RA GK +  PG+ RA  E         
Sbjct: 392 LYELIWKRTVACQMADARITQLSVLLKVEDAEFRAAGKRIDFPGYFRAYVEGSDDPDAAL 451

Query: 455 APAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLK 514
                 LP L  G      +++     TQPP  +TE  L+K +                 
Sbjct: 452 ENQEVILPPLKVGDRPNCREIDTVGHETQPPARYTEASLVKTL----------------- 494

Query: 515 DTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAF---SLIDAVPRAIADPGTTAIW 571
           ++ G+G  +T A II  ++DRGY+    KAL+ T  AF   SL+++    + D G T+  
Sbjct: 495 ESEGVGRPSTYASIIGTIIDRGYVQMRSKALTPTFTAFAVVSLLESHFPDLVDTGFTSRM 554

Query: 572 EQALDMVQSGE 582
           EQ LD +  G+
Sbjct: 555 EQKLDEIAIGK 565