Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 900 a.a., DNA topoisomerase I from Sinorhizobium meliloti 1021

 Score =  140 bits (352), Expect = 3e-37
 Identities = 164/626 (26%), Positives = 270/626 (43%), Gaps = 106/626 (16%)

Query: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAY---DEKYK 57
           M + + E PS+AK I             +LG G  V    GH+ +    D     DE ++
Sbjct: 7   MNVVVVESPSKAKTINK-----------YLGPGYKVLASFGHVRDLPAKDGSVRPDEDFE 55

Query: 58  RWVLADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHC 117
                        W+  V   +A + K +   +  +  L++ATD DREGE I+  +++  
Sbjct: 56  M-----------SWE--VDGASAKRMKDIADAVKSSDGLILATDPDREGEAISWHVLDLL 102

Query: 118 RYRG-----PIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSR 172
           R +      P++R+  +A+   ++  A+A  +P     SL  + L R   D+L+G N+S 
Sbjct: 103 RKKKVIGDKPVKRVVFNAITKKAVLDAMA--EPRDIDASLVDAYLARRALDYLVGFNLS- 159

Query: 173 LFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHER-ITFTA 231
              +L R+    G    GRVQ+  LRLV DR+  I  FV   YW I   L+  R   F A
Sbjct: 160 --PVLWRK--LPGARSAGRVQSVALRLVCDREAEIERFVTEEYWNISALLKTPRGDEFEA 215

Query: 232 QWRAAEDACDDQGRCLDPQLARDAADAMR-----NAATARLVKLRTERMREVAPLPFDLG 286
           +  +A+      G+ L P+   +  +A R     + A+  +  +  + ++     PF   
Sbjct: 216 RLVSAD------GKRLPPKAIGNGEEANRLKSLLDGASYVVESVEAKPVKRNPSPPFTTS 269

Query: 287 TLQEICSKKLGLGAQETLDIAQSLY-------ETHKVITYPRSDCGYLPLSQHSEAPKIL 339
           TLQ+  S KLG  A  T+ +AQ LY       ET  +ITY R+D   +       AP+ +
Sbjct: 270 TLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETVGLITYMRTDGVQM-------APEAI 322

Query: 340 AALARADAAV--NELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQ----LTGKHR 393
            A  +A  +      +P       ++A N  +  AH  I PT   +   Q    L G   
Sbjct: 323 EAARQAIGSQFGERYLPEKPRFYSTKAKNAQE--AHEAIRPTDFDRTPDQVRRFLDGDML 380

Query: 394 AVYTLIRARYLAQFLPNHEYDRTQADF--DCAGQ--ALRAVGKVVIEPGWKRALPEALAP 449
            +Y L+  R +A  + + E +RT A+   D AG+   LRA G V+   G+  A  +    
Sbjct: 381 RLYDLVWKRGIASQMASAEIERTTAEIVADNAGKKAGLRATGSVIRFDGFIAAYTDMKED 440

Query: 450 A-KGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPL 508
             +  +      LP +   ++ A  K+N    +T+PP  ++E  LIK M+ +        
Sbjct: 441 GEQADDGDEDGRLPEINARENLAKQKINASQHFTEPPPRYSEATLIKKMEEL-------- 492

Query: 509 LKQKLKDTTGIGTEATRAGIIQGLLDRGY-------LVKNGKALSATPAAFSLIDAVPRA 561
                    GIG  +T A  +  L+DR Y       LV   K    T    + +++    
Sbjct: 493 ---------GIGRPSTYAATVTTLIDRDYVEIDKRKLVPQAKGRLVT----AFLESFFTR 539

Query: 562 IADPGTTAIWEQALDMVQSGEMSLEE 587
             +   TA  E+ LD + +GE++ ++
Sbjct: 540 YVEYDFTASLEEKLDQISAGELNWKD 565