Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 872 a.a., DNA topoisomerase I (RefSeq) from Shewanella amazonensis SB2B

 Score =  122 bits (307), Expect = 5e-32
 Identities = 148/601 (24%), Positives = 250/601 (41%), Gaps = 91/601 (15%)

Query: 54  EKYKRWVLADLPIVPEK-WKM--RVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIA 110
           +K K+ ++A + + PE  W+   +V P      K ++ L   A ++ +ATD DREGE IA
Sbjct: 69  QKDKQALVARMGVDPEHGWQANYQVLPGKEKVVKELQSLASSADQIYLATDLDREGEAIA 128

Query: 111 RELVE-----HCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWL 165
             L E       RY+    R+  + +   +I++A +  +P     ++ ++   R   D +
Sbjct: 129 WHLQEVIGGDESRYK----RVVFNEITKGAIQEAFS--RPTDLNTNMVNAQQARRFLDRV 182

Query: 166 IGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHE 225
           +G  +S L      +      L  GRVQ+  +RLVV+R+  I  FVP  +W +     H 
Sbjct: 183 VGFMVSPLLWKKVARG-----LSAGRVQSVAVRLVVEREAEIKAFVPEEFWDV-----HA 232

Query: 226 RITFTAQWRAAEDACDDQGRCLDPQLARDAADAMRNAATARL-VKLRTERMREVAP-LPF 283
            ++  A      +    +    +P    +A  A+     A   V  R ++     P  PF
Sbjct: 233 TLSTPAAAELVMEVSRYRNEAFEPVTQSEAMAAVNALEKAAFTVTDREDKATSSKPSAPF 292

Query: 284 DLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALA 343
              TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L                
Sbjct: 293 ITSTLQQAASTRLGFGVKKTMMLAQRLYEAGH-ITYMRTDSTNL---------------- 335

Query: 344 RADAAVNELMPHIETQRRSRAWNDAKV---------SAHHGIIPTGAGKDVGQLTGKHR- 393
            +  A+  +  HIE +  S+   ++ +          AH  I P+    +   L    R 
Sbjct: 336 -SQEALENVRAHIEKEFGSKYLPESPIRYGSKEGAQEAHEAIRPSNVKVESATLIDMERD 394

Query: 394 --AVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAK 451
              +Y LI  +++A  +    YD T+         L+A G+++   GW R     + PA 
Sbjct: 395 AQRLYELIWRQFVACQMTPAVYDATRITAKAGDYELKASGRILKFDGWTR-----VQPAL 449

Query: 452 GREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQ 511
            ++      LP +  G   ++  ++ K  +T+PP  ++E  L+K +              
Sbjct: 450 KKKNEEDNTLPDVQVGDMLSLKALDPKQHFTKPPARYSEASLVKEL-------------- 495

Query: 512 KLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIAD---PGTT 568
              +  GIG  +T A II  + DRGY+    +   A      + + +  + ++      T
Sbjct: 496 ---EKRGIGRPSTYAAIISTIQDRGYVKVENRRFYAEKMGEIVTERLVESFSELMNYDFT 552

Query: 569 AIWEQALDMVQSGEMS----LEEFVAKQAAWMSKQVAR--CNGMR---MTITG-PASPAG 618
           A  EQ LD V  G+      L+ F +   A + K  A     GMR   M +T  P    G
Sbjct: 553 AGMEQTLDDVAKGDKDWKGVLDGFYSGFTAKLEKAEAEPDAGGMRPNQMVLTDIPCPTCG 612

Query: 619 R 619
           R
Sbjct: 613 R 613