Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  291 bits (745), Expect = 8e-83
 Identities = 211/638 (33%), Positives = 322/638 (50%), Gaps = 37/638 (5%)

Query: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWVLA 62
           L + EKPS A+DIAA LG   + +  +  +   V   +GHL+E A P+A D  +    LA
Sbjct: 5   LIIPEKPSVAQDIAAALGGFSKREDWFERDDAIVCSALGHLVELACPEAEDPGFD---LA 61

Query: 63  DLPIVPEKWKMRVKPKTASQFKAVKRLLG--EAQELVIATDADREGEMIARELVEHCRYR 120
            LP +P ++ +    KT+++   +K+L+   + Q +V A DA REGE+I R +   C  R
Sbjct: 62  RLPAIPSRFNLAPIAKTSARLSLLKKLMNRQDVQLVVNACDAGREGELIFRYIYLCCGCR 121

Query: 121 GPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLL-GR 179
            P+QR+W+ ++  A+I++A A  +PGAE   L++SA  RS  DWL+G+N +R +++L  R
Sbjct: 122 KPMQRMWIQSMTPAAIKEAFAKRRPGAELDGLFNSAQSRSEGDWLVGINGTRAYSILETR 181

Query: 180 QSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQW-----R 234
            +G + +  VGRVQTPTL L+V R+ +I  F+   Y+ I  +   +   + A+W     +
Sbjct: 182 VTGERTLSTVGRVQTPTLALIVAREEAIRSFIAKPYYEIQGEFAAKTGVYGAKWIDTAFQ 241

Query: 235 AAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSK 294
           A     D +   L  +   DA  A         V   T       P  FDL TLQ   +K
Sbjct: 242 ADPSTPDARAERLFDKAKADAIVAKCTGKRPSSVADATTDSISTPPKLFDLTTLQREANK 301

Query: 295 KLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMP 354
           K G  A +TL IAQ+LYE  KV+TYPR+D   LP      A   L  L      V+    
Sbjct: 302 KFGFSASQTLAIAQALYEKQKVLTYPRTDSSALPEDYLDTARATLTRLGDGGLTVSPFAA 361

Query: 355 HIETQRR--SRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQFLPNHE 412
                 +   R +N+AK+S H  IIPTG       L+G+   ++ L+  R++A F P  +
Sbjct: 362 KAVAMVKPDKRIFNNAKISDHFAIIPTGLVS--ATLSGEEAKIFDLVSRRFIAAFFPPAK 419

Query: 413 YDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQGQDYAV 472
           Y +T        +  RA G+V++E GW     +    A   E PA  A+      ++  +
Sbjct: 420 YLQTVRLTVVEQETFRASGRVLVEEGWLAVYGK---EADDSEDPALCAVAKDELPENRRI 476

Query: 473 AKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGL 532
             V+LK   T+PP  FTE  L+ AM++    +ED  L++ +KD  G+GT ATRA  I+ L
Sbjct: 477 EAVSLK---TKPPLRFTEATLLGAMESAGADIEDDELREAMKD-RGLGTPATRASTIEAL 532

Query: 533 LD---------RGYLVKNGKALSATPAAFSLIDAVPR----AIADPGTTAIWEQALDMVQ 579
           L          + Y+V+  K L+ T  AF L+  +      A+A   TT +WE  L  ++
Sbjct: 533 LADKDGKGRSIQPYVVREKKNLAPTNKAFKLVKFLRENGLTALASAETTGLWEFKLREME 592

Query: 580 SGEMSLEEFVAKQAAWMSKQVARCNGMRMTITGPASPA 617
            G     +F+ + AA   + V R   +   +  PAS A
Sbjct: 593 KGRCQRSDFMGEIAALAREFVTRVQALAKDL--PASAA 628