Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

 Score =  155 bits (391), Expect = 9e-42
 Identities = 156/615 (25%), Positives = 258/615 (41%), Gaps = 74/615 (12%)

Query: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWL--------GNGVTVTWCIGHLLETAPPDAYDE 54
           L +CEKP+ AK IA  LG  ++     +        G  + V   +GHL          E
Sbjct: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLY------TLQE 57

Query: 55  KYKRWVLADLPIVPEKW----KMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIA 110
           K K     D P+    W     +  K        A+K++  +A +  +ATD D EGE+I 
Sbjct: 58  KTKT-KFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116

Query: 111 RELVEHCRYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNM 170
              +     +    RL  S+L    I KA     P    F L  +   R + DW  G+N+
Sbjct: 117 YHALNFSCGQKNAHRLRFSSLTKKEILKAYE--NPNEIDFGLVDAGDSRHKIDWYFGINV 174

Query: 171 SRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFT 230
           SR              L  GRVQ P L  +VD++  I +FVP  YW ++  L ++ I   
Sbjct: 175 SRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLI--- 231

Query: 231 AQWRAAEDACDDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAP-LPFDLGTLQ 289
                   A  +  +  D + A  A + ++    A +  ++ + M+ + P  PFDLG LQ
Sbjct: 232 --------AVHELEKFWDEEQANKAYEKVKGQKQATVSDVK-KSMKTIPPNPPFDLGALQ 282

Query: 290 EICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAV 349
                      ++T ++AQ LYE     +YPR+    LP    +   ++L  L++     
Sbjct: 283 REAHNMFRFSPKKTQEVAQKLYE-KGYCSYPRTSSQKLP-DDKAYMDEVLKNLSKN---- 336

Query: 350 NELMPHIET---QRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQ 406
               P+IET   + R          AH  +      K+  +L      +Y LI  R +A 
Sbjct: 337 KNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKE--KLPDDELKLYELIARRTIAL 394

Query: 407 FLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQ 466
           +  N + + ++ + D  G+  +  G   +E GW     E     K  E      LP L +
Sbjct: 395 YWDNAKREYSKINLDINGETFKLSGSRTVEEGWH----EIYYYTKFDEV----ELPELKK 446

Query: 467 GQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRA 526
                V  +N +   T+PPK +T   +IK ++           K+KL      GT+ATRA
Sbjct: 447 NDVINVNNINFEAKETKPPKRYTMASIIKELE-----------KRKL------GTKATRA 489

Query: 527 GIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPR---AIADPGTTAIWEQALDMVQSGEM 583
            I++ L  RGY++++G +L+ T     + + + +    I +   T   E  L+++Q  ++
Sbjct: 490 DILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKI 548

Query: 584 SLEEFVAKQAAWMSK 598
             EE + +    ++K
Sbjct: 549 KKEEVIQETKDKLTK 563