Pairwise Alignments

Query, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

Subject, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  124 bits (310), Expect = 2e-32
 Identities = 134/539 (24%), Positives = 218/539 (40%), Gaps = 76/539 (14%)

Query: 86  VKRLLGEAQELVIATDADREGEMIARELVEHCRYRGP-IQRLWLSALDDASIRKALAALK 144
           ++    +A  + +A D DREGE IA  +      +   I+R+  + +   ++R+AL    
Sbjct: 67  LREAAAKADTVYLAPDPDREGEAIAWHVAALIEGKADNIKRIQFNEITARAVREALE--N 124

Query: 145 PGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRD 204
           P     +L+ +   R   D L+G  +S L     ++      +  GRVQ+  LRL+VDR+
Sbjct: 125 PRDLNRALFDAQQARRVLDRLVGYKLSPLLWKKVKRG-----ISAGRVQSVALRLIVDRE 179

Query: 205 RSIADFVPVAYW------------AIDVDLQHERITFTAQWRAAEDACDDQGRCLDPQLA 252
                F P  YW            A       +   F A+    +     +    D   A
Sbjct: 180 SERRAFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGK---KAHVADADAA 236

Query: 253 RDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYE 312
               DAMR          R +R R+  P PF   TLQ+  +++LG  A+ T++IAQ LYE
Sbjct: 237 NALEDAMRGKPFVITAVERKKRERQPQP-PFITSTLQQAANQRLGYSAKRTMNIAQRLYE 295

Query: 313 --------THKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMPHIETQRRSRA 364
                   T  +ITY R+D   +       A   +     AD       P    Q +++ 
Sbjct: 296 GVELGEMGTVALITYMRTDSVRVSDEARDAARAFVTETWGAD-----FCPAKPRQFKTKG 350

Query: 365 WNDAKVSAHHGIIPTGAGKDVGQLTGKHR------AVYTLIRARYLAQFLPNHEYDRTQA 418
              +   AH  + P     +V   + KH        +Y L+ +R++A  +    +D T  
Sbjct: 351 ---SAQDAHEAVRPVDV--NVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTV 405

Query: 419 DFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQGQDYAVAKVNLK 478
              C     RA G+ ++ PG+  A+P+        +      LP L +G+      V  +
Sbjct: 406 AIACGPAEWRAKGERMLFPGFLAAMPQ--------KEEGDAELPPLQEGETLHPVSVEKE 457

Query: 479 DLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYL 538
             +TQPP  +TE  L++ +                 +  GIG  +T A II  L+DR Y 
Sbjct: 458 QKFTQPPARYTEASLVREL-----------------EERGIGRPSTYASIISTLIDRDYT 500

Query: 539 VKNGKALSATPAAFSLIDAVPR---AIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAA 594
               K    T    ++ D + R    + D G TA  E +LD V  G +   E +++ +A
Sbjct: 501 RLEDKHFVPTDLGATVCDLLARHFTTLMDVGFTAQMEDSLDKVAEGGLDWVELLSRFSA 559