Pairwise Alignments

Query, 146 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 279 a.a., CBS domain-containing protein from Methanococcus maripaludis JJ

 Score = 50.1 bits (118), Expect = 3e-11
 Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)

Query: 11  KDQKNQEVHVIKHDHTVFEALVRMSEKNVGALPVV-QDGVVVGIISERDYARKIMLKGLS 69
           K+     V +IK +  + E +    EK +G +PV+ + GV++  I+ERD  +   LK   
Sbjct: 85  KEIMTDNVVLIKENAELNEVIDLYVEKKIGGMPVIDKSGVLITTINERDVIK--YLKDQV 142

Query: 70  SVTTKVHEVMSSPVITVDTHKKVDECMNIMTDSHLRHLPVVENGKLLGLLSIGDLVK 126
                V + M+  V++    +++ +    M  +  R LPVV   KL+G+++  D VK
Sbjct: 143 DEKLLVKDCMTENVVSATPGERLKDVARTMLRNGFRRLPVVSEEKLVGIITSTDFVK 199



 Score = 44.3 bits (103), Expect = 2e-09
 Identities = 25/95 (26%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 42  LPVVQDGVVVGIISERDYAR---------KIMLKGLSSVTT-KVHEVMSSPVITVDTHKK 91
           LPVV +  +VGII+  D+ +          +    +  +T  ++ ++M + +++V +  K
Sbjct: 180 LPVVSEEKLVGIITSTDFVKLFGSDWAFNHMKTGNIREITNVRIQDIMKTDIVSVTSDIK 239

Query: 92  VDECMNIMTDSHLRHLPVVENGKLLGLLSIGDLVK 126
           + + +  M + ++  LPVV+  KL+GL++  D+VK
Sbjct: 240 LIDAIKKMNELNIGVLPVVDGEKLIGLITEKDIVK 274



 Score = 38.5 bits (88), Expect = 8e-08
 Identities = 17/59 (28%), Positives = 35/59 (59%)

Query: 8   LKAKDQKNQEVHVIKHDHTVFEALVRMSEKNVGALPVVQDGVVVGIISERDYARKIMLK 66
           ++ +D    ++  +  D  + +A+ +M+E N+G LPVV    ++G+I+E+D  + I  K
Sbjct: 221 VRIQDIMKTDIVSVTSDIKLIDAIKKMNELNIGVLPVVDGEKLIGLITEKDIVKCIYKK 279



 Score = 36.6 bits (83), Expect = 3e-07
 Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 27  VFEALVRMSEKNVGALPVVQDGV--VVGIISERDYAR-------------KIMLKGLSSV 71
           + EAL  M ++NV  + V   G   V GI++  D                K     LS++
Sbjct: 21  IIEALTMMDKENVRRICVADPGTGRVEGILTNMDIVDFLGGGSKYNLVKFKHNHNMLSAI 80

Query: 72  TTKVHEVMSSPVITVDTHKKVDECMNIMTDSHLRHLPVVE-NGKLLGLLSIGDLVKEAIA 130
              V E+M+  V+ +  + +++E +++  +  +  +PV++ +G L+  ++  D++K  + 
Sbjct: 81  NEPVKEIMTDNVVLIKENAELNEVIDLYVEKKIGGMPVIDKSGVLITTINERDVIK-YLK 139

Query: 131 DQAD 134
           DQ D
Sbjct: 140 DQVD 143