Pairwise Alignments

Query, 146 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 54.3 bits (129), Expect = 3e-12
 Identities = 29/121 (23%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 26  TVFEALVRMSEKNVGALPVVQDGVVVGIISERDYARKIMLKGLSSVTTKVHEVMSSPVIT 85
           TV +A + M    V +L V  +  +VGI++++D   +++  GL      VH+ M++  I+
Sbjct: 168 TVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVLASGLDGQIA-VHQAMTTSPIS 226

Query: 86  VDTHKKVDECMNIMTDSHLRHLPVVENG-----KLLGLLSIGDLVKEAIADQADLIKQLE 140
           + ++  + E M +M++ ++ HLP+++       K +G+++  D+++   +    LI ++E
Sbjct: 227 ISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIE 286

Query: 141 Q 141
           +
Sbjct: 287 R 287



 Score = 43.5 bits (101), Expect = 6e-09
 Identities = 22/65 (33%), Positives = 37/65 (56%)

Query: 70  SVTTKVHEVMSSPVITVDTHKKVDECMNIMTDSHLRHLPVVENGKLLGLLSIGDLVKEAI 129
           + T+++  +MSS  IT+D H  V +   +M +S +  L V +N KL+G+L+  DL    +
Sbjct: 147 ATTSRISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTDNHKLVGILTDKDLRNRVL 206

Query: 130 ADQAD 134
           A   D
Sbjct: 207 ASGLD 211



 Score = 30.0 bits (66), Expect = 6e-05
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 21/117 (17%)

Query: 21  IKHDHTVFEALVRMSEKNVGALPVVQDG-----VVVGIISERDYAR-----KIMLKG--- 67
           I  +  +FEA++ MSE N+  LP++ +        +G+++  D  R      ++L G   
Sbjct: 227 ISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILRGQGSQPLLLIGEIE 286

Query: 68  -------LSSVTTKVHEVMSSPVITVDTHKKVDECMNIMTDSHLRHLPVVENGKLLG 117
                  L SV+ ++  ++ + +      +++   +  +TD+  R L +V N ++LG
Sbjct: 287 RQRDLASLISVSKQIPVLLQNLISADARAEEIGRVLTSVTDALTRRL-IVLNQQILG 342