Pairwise Alignments

Query, 356 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  173 bits (438), Expect = 8e-48
 Identities = 111/347 (31%), Positives = 175/347 (50%)

Query: 4   LTGILAASLLLVACSKEDAPPEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVP 63
           LT IL  ++L     ++    E +RPV  +E+ A  +     ++G+++AR E NLGFRV 
Sbjct: 16  LTAILLGAVLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGFRVG 75

Query: 64  GRIARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELF 123
           G+I  R+V++G  V+ G +LA +D TD +  + SA+ +L   + Q         R ++LF
Sbjct: 76  GKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQLF 135

Query: 124 NRGVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQ 183
            +   +QAQLD A        +T D A +S++QA +Q+ Y +L+ D  GIVTA NA+ GQ
Sbjct: 136 TKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADIGQ 195

Query: 184 VVSAGQQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQA 243
           VV  G  VVT+A    KE  I +P        P     V    +  +     VRE+   A
Sbjct: 196 VVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVREVSGSA 255

Query: 244 QSATRTRRARLTLTETPPAFRLGTAISVTLSTAIAPRIEVPLSALQEVDGKTRIWLLDTH 303
              +RT   R++L          TA     + + AP + +PLSAL + DG+  +W++D  
Sbjct: 256 DQRSRTFSVRVSLPNDERVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNIVWIVDRD 315

Query: 304 SQTVQTRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKVKI 350
             TV  R I +     +   + DG+  G+ +V AG   +    KV++
Sbjct: 316 FSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRL 362