Pairwise Alignments

Query, 356 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  206 bits (524), Expect = 8e-58
 Identities = 125/350 (35%), Positives = 193/350 (55%), Gaps = 6/350 (1%)

Query: 7   ILAASLLLVACSKEDAP--PEPVRPVLSMEVKAEDQENLGRFAGTIQARYESNLGFRVPG 64
           + A +++L +C KE AP  PEP RP L+  V A  Q ++  + G ++ARYE++ GFR+ G
Sbjct: 10  LAATAMVLASCGKE-APKAPEP-RPALTQVVGAAGQSDM-LWVGEVRARYETDQGFRIGG 66

Query: 65  RIARRVVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQELFN 124
           ++  R VD+GA V+KG +LA LDP D      +A       +A ++ A+A   RQ++L  
Sbjct: 67  KVVERKVDIGAVVKKGQILARLDPVDAGLSAAAANAQTKAAEADFLVAKAEYERQKKLLE 126

Query: 125 RGVGAQAQLDIAQTDLKTTQATLDQAKASVNQANDQLRYAELRTDHAGIVTAWNAEAGQV 184
           +   +Q+  D  +   K   A LDQA+A      +Q  Y +L  +  G+VT    E GQV
Sbjct: 127 KQFISQSAFDSREAQFKAALARLDQARAQAAVTGNQAGYTDLVAEKDGVVTDVKVEPGQV 186

Query: 185 VSAGQQVVTLARPDIKEAVIDLPAGLAERLPPDVVFLVAGQLDPSVNTTAIVREIEPQAQ 244
           VSAGQ  + LA    KE V+ +P G  + + P    ++    +   +  A VRE+ P A 
Sbjct: 187 VSAGQPAIRLALAGDKEVVVAVPEGRMKGIEPGTSAVIRLWANQDQSYAARVREVAPAAD 246

Query: 245 SATRTRRARLTLTETPPAFRLGTAISVTLSTAIAPRIEVPLSALQEVDGKTRIWLLDTHS 304
           +ATR+ + ++T+ E     RLG    V + +A AP + VP +AL   DGK  +W+++  S
Sbjct: 247 AATRSFQVKVTVLEPDAGLRLGMTAGVLIGSAEAPLL-VPTAALTRQDGKNTVWVVNPQS 305

Query: 305 QTVQTRDISVISRDADSALLNDGVKPGERIVIAGVNSLKPGQKVKIDEDS 354
             VQ R ++      D  ++  G+  GER+VIAGV+ L+PGQ V+  E S
Sbjct: 306 GEVQPRSVTTGPFREDGVVVEKGLARGERVVIAGVHKLQPGQLVRAVEPS 355