Pairwise Alignments

Query, 351 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 285 a.a., permease from Methanococcus maripaludis S2

 Score = 57.4 bits (137), Expect = 4e-13
 Identities = 47/230 (20%), Positives = 111/230 (48%), Gaps = 17/230 (7%)

Query: 125 MCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVL 184
           +CS    PVA  M  +  ++G  ++F ++   + P  ++    +LG+    ++++A +VL
Sbjct: 70  LCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVL 129

Query: 185 VVGVSLVAQRISRPDQVPEPALEAMAEVSVVESQPFLSRWLRTLWQLFWSTIPVYILAVL 244
              + ++       D++P        E  V   + F    L+ L++   + +P  ++  L
Sbjct: 130 ACSLGIIFYN----DKIP----FYFEEYDVKAEETF----LKVLFKQMKNLMPAIMIGFL 177

Query: 245 ILGAARVWLFPH--VDGAMTNSLVWLVPLAIVGTLFVIPTAAEIPIVQTMMALGMGTGPA 302
           I G   ++  P   +  A++N+++     ++      +   A IP++ ++   G+  G  
Sbjct: 178 ISG-FMMYFIPKDIILYALSNNIMMYFYASVARIFIFLCPNAMIPLISSVAINGVPKGLI 236

Query: 303 VALLMTLPSVSLPSLLMLRKDFDARV-LATVAGLTMLVGVVCGLIGAVLL 351
           ++ L++ PS+ LP +  + K +  ++ L  V G+ +L G++ G++  +LL
Sbjct: 237 LSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGII-GILVDILL 285



 Score = 28.9 bits (63), Expect = 2e-04
 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 232 FWSTIPVYILAVLILGA-ARVWL-------FPHVDGAMTNSLVWLVPLAIVGTLFVIPTA 283
           F+S   VYIL   ++ A  +V L       F H+   + NS   ++  +++G +  + +A
Sbjct: 17  FFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHI---LDNSKKSIIIASLIGAVLPLCSA 73

Query: 284 AEIPIVQTMMALGMGTGPAVALLMTLPSVSLPSLLMLRKDFDARVLATVAGLTMLVGVVC 343
           + IP+   M + G   G  ++ +++  S++ P  +ML        +A +  L  LV + C
Sbjct: 74  SGIPVANVMNSKGTNLGTTMSFIVSASSIT-PLGVMLTYSLLGYEIAVMQILASLV-LAC 131

Query: 344 GL 345
            L
Sbjct: 132 SL 133