Pairwise Alignments

Query, 351 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 300 a.a., permease from Methanococcus maripaludis S2

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 53/285 (18%), Positives = 123/285 (43%), Gaps = 12/285 (4%)

Query: 70  YAQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFG-----RAGLGSTLRGGLFALPGM 124
           Y  V F  I    V  ++ GS++ V   ++ + +LF      R G+   +  GL  +   
Sbjct: 15  YFTVQFNQIAIYWVFGIVFGSIISVF-GKNKIHKLFASIQNRRLGVFGMIPAGLLGIASP 73

Query: 125 MCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVL 184
           +C     P+AA   +  +      AF +++ +LNP  +++    LG    A+R+++ +  
Sbjct: 74  ICMYGTIPIAASFSKSGMRDDWLAAFMMSSILLNPQLIIYSA-ALGETALAVRIISALAC 132

Query: 185 VVGVSLVAQRISRPDQVPEPALEAMAEVSVVESQP-FLSRWLRTLWQLFWSTIPVYILAV 243
            V   L+ + +    +         +E +  ++ P  L R L+ +W+   +T   +++ +
Sbjct: 133 GVIAGLLVKFLFNDRKFFN--FSGFSEPTSRDNDPNVLLRLLKNIWRNIKATGHYFLIGI 190

Query: 244 LILGAARVWLFPHVDGAMTNSL--VWLVPLAIVGTLFVIPTAAEIPIVQTMMALGMGTGP 301
           L+    + ++ P     +  S     ++  A +G    +     +P++   +  GM  G 
Sbjct: 191 LLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSGMSMGA 250

Query: 302 AVALLMTLPSVSLPSLLMLRKDFDARVLATVAGLTMLVGVVCGLI 346
           A A ++T P+  + +L  ++    A+        T++  ++ G++
Sbjct: 251 AAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAIIAGVV 295



 Score = 38.5 bits (88), Expect = 2e-07
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 83  VLAVILGSLLQVLIPRDWLLRLFGRAGLGSTLRGGLFALPGMMCSCCAAPVAAGMRRQQV 142
           ++ ++L +L Q  +  D    LFG       L      +P  +C     P+        +
Sbjct: 187 LIGILLSALFQHYVSPDAFANLFGSQRGFGVLMAATIGVPLYVCGGGTLPLLMAWLDSGM 246

Query: 143 SVGAALAFWIANPVLNPATLVFMGFVLG----WGFTALRLVAGIVLVVGVSLV 191
           S+GAA AF I  P      L  +  VLG      + A  +++ I+  V V+L+
Sbjct: 247 SMGAAAAFMITGPATKITNLGAVKIVLGAKHFTAYVAFTIISAIIAGVVVNLM 299