Pairwise Alignments

Query, 351 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 318 a.a., permease from Methanococcus maripaludis S2

 Score = 84.0 bits (206), Expect = 5e-21
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 19/256 (7%)

Query: 108 AGLGSTLRGGLFALPGMMCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGF 167
           +G+   +   L       CSC + P+  G     V +G  L+F I +P++N A    +  
Sbjct: 70  SGVSGNIMASLLGTVTPFCSCSSVPIFIGFIEAGVPLGVTLSFLITSPIVNEAAFAVLLA 129

Query: 168 VLGWGFTALRLVAGIVLVVGVSLVAQRISRPDQVPE------PALEAMAEVSVVESQPFL 221
             GW    + +V+G+++ V   L+  ++   +QV E           + E++  E   F 
Sbjct: 130 SFGWQIAMIYVVSGVIIGVVGGLIIGKLGMENQVEEYVYSIRSRARKIKELTQKERLKFA 189

Query: 222 SRWLRTLWQLFWSTIPVYI-LAVLILGAARVWLFPHVDGAMTNSLVWLVPLAIV-GTLFV 279
               R + +  W  I + I +  +I G A   +     G          PLA++  T+  
Sbjct: 190 YDSTRDIVKRVWLYILIGIGIGAIIHGYAPEEVLAKYAGPEN-------PLAVIFATIIA 242

Query: 280 IP----TAAEIPIVQTMMALGMGTGPAVALLMTLPSVSLPSLLMLRKDFDARVLATVAGL 335
           +P        IPI + ++  G+G G A+A +M   ++S P  ++LRK    +++A   G+
Sbjct: 243 VPLYSNALGTIPIAEALIGKGVGIGTALAFMMATTALSFPEAVLLRKVIKPKLIAVFFGI 302

Query: 336 TMLVGVVCGLIGAVLL 351
           T +  V+ G +  +LL
Sbjct: 303 TSIAIVITGYLFNILL 318



 Score = 31.6 bits (70), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 38/81 (46%)

Query: 78  IWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGLGSTLRGGLFALPGMMCSCCAAPVAAGM 137
           +W   ++ + +G+++    P + L +  G     + +   + A+P    +    P+A  +
Sbjct: 200 VWLYILIGIGIGAIIHGYAPEEVLAKYAGPENPLAVIFATIIAVPLYSNALGTIPIAEAL 259

Query: 138 RRQQVSVGAALAFWIANPVLN 158
             + V +G ALAF +A   L+
Sbjct: 260 IGKGVGIGTALAFMMATTALS 280