Pairwise Alignments

Query, 351 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 331 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 7e-18
 Identities = 67/279 (24%), Positives = 124/279 (44%), Gaps = 27/279 (9%)

Query: 71  AQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGLGSTLRGGLFALPGMMCSCCA 130
           ++++ L +    V+A++  SL  V   RD+L       G+G  L G +F      CSC +
Sbjct: 37  SKIFVLLLVMIYVIALLRASL-DVERVRDYLAGK--NKGVGYLL-GSIFGAITPFCSCSS 92

Query: 131 APVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIV--LVVGV 188
            PV  G     + +G  +AF I +P++N   ++ +  +LGW FT L +  G+   ++ GV
Sbjct: 93  IPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLMSLLGWKFTLLYVAVGMTVGMLGGV 152

Query: 189 SLVAQRISR-------------PDQVPEPALEAMAEV-SVVESQPFLSRWLRTLWQLFWS 234
            L A +  R                     +  +A V S+ E   F       ++   W 
Sbjct: 153 LLDAMKAERWLQSFAAEALLRGRQMAASDVVSTVARVLSLSERHQFAKAEAIEIFGRVWK 212

Query: 235 TIPVYILAVLILGAARVWLFPH--VDGAMTNSLVWLVPLAI-VGTLFVIPTAAEIPIVQT 291
               +++  + LGAA     P   ++  +     W VP+A+ +G          IP++++
Sbjct: 213 ----WVIIGVGLGAALHGFVPEGWIEAHLGQGQWWSVPVAVLIGIPLYSNATGIIPVMES 268

Query: 292 MMALGMGTGPAVALLMTLPSVSLPSLLMLRKDFDARVLA 330
           ++A G+  G  +A  M+  + S P  ++L++    R+LA
Sbjct: 269 LLANGLPIGTTLAFCMSTVAASFPEFILLKQVMQWRLLA 307



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 5/151 (3%)

Query: 41  KAFVAADNHSIGASILNDQQSAPLAAALAYAQVYFLAIWKAAVLAVILGSLLQVLIPRDW 100
           +   A+D  S  A +L+  +    A A A     F  +WK  ++ V LG+ L   +P  W
Sbjct: 175 RQMAASDVVSTVARVLSLSERHQFAKAEAIE--IFGRVWKWVIIGVGLGAALHGFVPEGW 232

Query: 101 LLRLFGRAGLGSTLRGGLFALPGMMCSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPA 160
           +    G+    S     L  +P    +    PV   +    + +G  LAF ++    +  
Sbjct: 233 IEAHLGQGQWWSVPVAVLIGIPLYSNATGIIPVMESLLANGLPIGTTLAFCMSTVAASFP 292

Query: 161 TLVFMGFVLGWGFTALRLVAGIVLVVGVSLV 191
             + +  V+ W   AL LV   VL+   +LV
Sbjct: 293 EFILLKQVMQWRLLALLLV---VLLTAFTLV 320



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 272 AIVGTLFVIPTAAEIPIVQTMMALGMGTGPAVALLMTLPSVSLPSLLMLRKDFDARVLAT 331
           +I G +    + + IP+     + G+  G  +A L+T P ++  ++L+L      +    
Sbjct: 79  SIFGAITPFCSCSSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLMSLLGWKFTL- 137

Query: 332 VAGLTMLVGVVCGLIGAVLL 351
              L + VG+  G++G VLL
Sbjct: 138 ---LYVAVGMTVGMLGGVLL 154