Pairwise Alignments

Query, 364 a.a., tRNA 2-selenouridine synthase from Pseudomonas simiae WCS417

Subject, 353 a.a., tRNA 2-selenouridine synthase SelU from Phaeobacter inhibens DSM 17395

 Score =  132 bits (331), Expect = 2e-35
 Identities = 109/351 (31%), Positives = 161/351 (45%), Gaps = 34/351 (9%)

Query: 1   MATDITDYRDIFLNDRP-MMDTRAPVEFVKGAFPGAVNLPLMTDDERQRVGTCYKQQGQQ 59
           M    T   DI   D   ++D R+P EF +  +PGA+NLP++ ++ER  VGT Y Q+   
Sbjct: 1   MTIRFTSLSDILDQDYDCVIDVRSPAEFAEDHWPGAINLPVLDNEERAEVGTIYVQESPF 60

Query: 60  AAIVLGHELVSGAIKAQRIEQWAQFAQANPEGYLYCFRGGLRSQIVQQWLKTEAGIEYPR 119
            A  +G   V     A  +EQ       +    +YC+RGG RS     WL  + G     
Sbjct: 61  LARKVGAAKVF-RNAADHVEQRLSHHPGSWRPLVYCWRGGQRSGSF-TWLLQQIGWRADV 118

Query: 120 VGGGYKAMRSFLLETVEQAATQCDFVLLGGMTGTGKTEVLGQLRN----ALDLEGHANHR 175
           V GGY++ R  + + + +      FV L G TGT KTE+L ++++     LDLEG A+HR
Sbjct: 119 VEGGYQSYRRLVNDYLYKTELPHRFVALDGYTGTAKTEILKRVQSLGGQVLDLEGLAHHR 178

Query: 176 GSSFGKRATGQPSNIDFENRLAVDLLKKRAGGIEGFVVEDESRMIGSCALPLPLHKGMQT 235
           GS  G   T QPS   FE+ +A  L +      +  +VE ES  IG+  +P  L  GM+ 
Sbjct: 179 GSLLGDHPTPQPSQKAFESEIAGQLARMTPD--QPVLVEAESSKIGARIIPPRLWSGMKR 236

Query: 236 YPMVWLEDSVEGRVERILRDYVVDLCAEFVDVFGEQGHALFAERLTQSLANIHKRLGGER 295
            P + +E S+  R   +L  Y                     + +  +   +  RL G R
Sbjct: 237 APRIAVEASIAARCRYLLAGY---------------------DDILSNGDMLRIRLDGLR 275

Query: 296 FQRLQAVMQDALAEQARSGAVDLHRVWIEGLLREYYDPMYAFQRESKGARI 346
             R  AV+ D   +   +G         E L+ ++YDP Y   R S GA +
Sbjct: 276 AHRSNAVV-DGWLQLIDAGD---KPALTEALMVQHYDPAYETARRSIGADV 322