Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 366 a.a., RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  172 bits (436), Expect = 1e-47
 Identities = 109/338 (32%), Positives = 175/338 (51%), Gaps = 1/338 (0%)

Query: 14  LLTLLSGCGEEKAEPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSFRVGGKIIQR 73
           L  LLS CG ++  P       V   Q +   A  +  G+++AR + DL+FR+GGK+ +R
Sbjct: 14  LAFLLSACGHDEPVPVAVRPAMVVKPQPS-VQAMDSYPGEVRARFEPDLAFRIGGKVSRR 72

Query: 74  MVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGYTS 133
           +V+ G RV A Q LA+LDP+D++  +++A+AQV A +A +    A   R + L+ +   S
Sbjct: 73  LVEEGQRVKANQPLAELDPEDVRLQLEAARAQVAAAEANLNLVRAERDRYKTLMERQMVS 132

Query: 134 RSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEVGQVVQATV 193
           RS+YD+A+   RS  + L   +A+   A  Q  Y+ L A   GV+  R  EVGQVV A  
Sbjct: 133 RSQYDNAENLYRSGTARLKQIKAEFDVANNQASYSILRAPQDGVVARRSVEVGQVVSAGQ 192

Query: 194 PIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANTGT 253
            +F+LA DGER+ + ++ E          P++V L   P  +  G++RE++PA    + T
Sbjct: 193 TVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFSGRIRELSPAADPKSRT 252

Query: 254 VQVKIALQALPKGMELGSVVSATANGPAKASIELPWAALTKDLSEPAVWLIDGDGKAQLH 313
              ++A  A     ELG           K  + +P +ALT +     VW+++ +   +  
Sbjct: 253 FAARVAFTAGNVPAELGQSARVFIQTADKVPLSVPLSALTAENGATYVWVVNANNTLKKV 312

Query: 314 KVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRV 351
            V V  +    V + +GL   + VV AG  +L  G +V
Sbjct: 313 PVRVGAFGEKTVPVLEGLGPDDWVVAAGVHVLLDGQQV 350