Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 85/344 (24%), Positives = 162/344 (47%), Gaps = 23/344 (6%)

Query: 17  LLSGCGE--EKAEPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSFRVGGKIIQRM 74
           LL+GCGE  + + P    +  +  + ++  A+ +T  G ++A  + DL+FR+ G++    
Sbjct: 25  LLAGCGEAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRLTDIA 84

Query: 75  VDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGYTSR 134
           V  GD+V   Q+LA LD +D +T +++AQ ++   +   ++  A F + + +      S+
Sbjct: 85  VKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAI------SK 138

Query: 135 SEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEVGQVVQATVP 194
           +E D          +    A+ ++  A+ +L YT + A   GVI+ +  E    VQA   
Sbjct: 139 AELDKV-------TNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQV 191

Query: 195 IFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANTGTV 254
           I  L    + +    +   +++    +      L   P+ +   K+R  +   ++++ T 
Sbjct: 192 IMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTY 251

Query: 255 QVKIALQALPKGMELGSVVSA----TANGPAKAS--IELPWAALTKD-LSEPAVWLIDGD 307
            V +  + L KG  +   +SA     A+ PA  +  I LP  AL  D   +  VW+++  
Sbjct: 252 SVVLGFEDL-KGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQ 310

Query: 308 GKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRV 351
            +A+   V +      +V+I   LK GE+V++AG   +  GM V
Sbjct: 311 NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354