Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 100/367 (27%), Positives = 168/367 (45%), Gaps = 43/367 (11%)

Query: 12  LGLLTLLSGCGEE-KAEPKQHSRVFV----QTVQSADFAAAVTLTGDIQARVQTDLSFRV 66
           L  L L++GC E  K E     RV V    + V    F  AV       A  ++ LSFRV
Sbjct: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVA-----NAAERSHLSFRV 74

Query: 67  GGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQ--VVAEQARVKQTAAAFVRQE 124
            G+I +  V  G RV    +LA+++P D +  VD+AQA+  V+  Q R         R +
Sbjct: 75  AGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYR---------RSQ 125

Query: 125 KLLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAE 184
            L+ KG  ++S++D   A     Q  +A A+ +LA  R  L +T L A   G+I+   AE
Sbjct: 126 PLVEKGLLAKSQFDEIAA-----QRQIARAELELAKLR--LSFTQLRAPMDGIISRVSAE 178

Query: 185 VGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITV--SLLDNPSIKAV-GKVR 241
             + VQ    I ++      + +  + + L    P  + +    +++  PS +    +++
Sbjct: 179 QFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIK 238

Query: 242 EVTPAVAANTGTVQVKIALQALPKGMEL-GSVVSATANGPAKA-----SIELPWAALTK- 294
           E T      TGT  V ++L    + + L G  V  +A G         +I +P  A+   
Sbjct: 239 EFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNA 298

Query: 295 -----DLSEPAVWLIDGDGKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGM 349
                D +   VWL++ D      +V +A+     V + +G+  G+++VVAG   L  GM
Sbjct: 299 DGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGM 358

Query: 350 RVEIAQQ 356
           +V++ ++
Sbjct: 359 KVQVLEE 365