Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  185 bits (469), Expect = 2e-51
 Identities = 120/361 (33%), Positives = 196/361 (54%), Gaps = 12/361 (3%)

Query: 4   RIFTCIFGLGLLTLLSGCGEEKAEPKQHSR-VFVQTVQSADFAAAVTLTGDIQARVQTDL 62
           R+ T I    L  +LSGC +EK E K+  R V V  + +A     +  +G ++AR + +L
Sbjct: 14  RLLTAIL---LGAVLSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNL 70

Query: 63  SFRVGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVR 122
            FRVGGKI +R+V++GDRV    +LA++D  D +  V SA+A ++A + +V+ TA A +R
Sbjct: 71  GFRVGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLR 130

Query: 123 QEKLLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQ 182
            E+L  K ++S+++ D A      + S   AA + L+ A+ Q+ YT L AD  G++TA  
Sbjct: 131 AEQLFTKSFSSQAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVN 190

Query: 183 AEVGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVRE 242
           A++GQVV    P+ ++A DGE++    V E  + E  P  P+ V    N  +   G VRE
Sbjct: 191 ADIGQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVRE 250

Query: 243 VTPAVAANTGTVQVKIALQALPKGMELGSVVSATANGPAKAS---IELPWAALTKDLSEP 299
           V+ +    + T  V++   +LP    +   ++AT    A +S   + +P +AL+K   + 
Sbjct: 251 VSGSADQRSRTFSVRV---SLPNDERVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQN 307

Query: 300 AVWLIDGD-GKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVEIAQQGA 358
            VW++D D        + +A +    V + DGL  G+ VV AG Q +   ++V + Q G 
Sbjct: 308 IVWIVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRL-QAGE 366

Query: 359 Q 359
           Q
Sbjct: 367 Q 367