Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 371 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  138 bits (347), Expect = 3e-37
 Identities = 105/348 (30%), Positives = 160/348 (45%), Gaps = 9/348 (2%)

Query: 12  LGLLTLLSGCGEEKA-------EPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSF 64
           + +  +L GC            EP++   V V  V+  + A   T    I+  +++DL F
Sbjct: 12  IAMALILGGCDSATPKPDRGGKEPRKAQPVMVVPVRFEEGARTRTFAATIRPSIESDLGF 71

Query: 65  RVGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQE 124
           R+ GK+ +R+V  GD V + Q L  LD  DL+   + A+A+V A Q+ + Q  A   R  
Sbjct: 72  RISGKVARRLVRTGDLVRSGQALLTLDTNDLRLQREQAEAEVKAAQSNLIQAEADEGRAV 131

Query: 125 KLLPKGYTSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAE 184
           +L  KG+ + +    A A    ++S L  AQ  L  A   LGY +L ADA GVITA   E
Sbjct: 132 ELQSKGWMANAALQKAHATAEEARSRLIRAQRALDLAGHALGYATLEADADGVITATPIE 191

Query: 185 VGQVVQATVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVT 244
            GQV+ A      LAR  E +AV  + ES  VE    A  ++SL   P      ++RE++
Sbjct: 192 PGQVISAGQAAVRLARLSELEAVVALPES-YVERVGRASASLSLWSLPGKTYDARLRELS 250

Query: 245 PAVAANTGTVQVKIALQALPKGMELGSVVSAT-ANGPAKASIELPWAALTKDLSEPAVWL 303
            A    T T   +  +      + +G   + T      +    LP  A+       AV++
Sbjct: 251 FAADLATRTFAARFVIPGADDKVRIGMSATLTLREQDERRFARLPLTAVYNHGRGAAVFV 310

Query: 304 IDGDGKAQLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRV 351
           +   G+     VT+ RY    V++  G+  GE VV  G + L P + V
Sbjct: 311 VGDGGELHERPVTIERYEDRNVLVTSGVSDGETVVALGVEKLDPALTV 358