Pairwise Alignments

Query, 360 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 357 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  183 bits (464), Expect = 7e-51
 Identities = 116/341 (34%), Positives = 181/341 (53%), Gaps = 2/341 (0%)

Query: 17  LLSGCGEEKAEPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSFRVGGKIIQRMVD 76
           LL+GC + K+E K   R  + TV +   A  + + G ++ + +TD  FR+ G++I R V+
Sbjct: 15  LLTGCND-KSETKPPVRPVMSTVIAPLQATNLAVVGTVEPQFKTDYGFRMLGRLIARPVN 73

Query: 77  VGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGYTSRSE 136
           +GD V   Q LA +DP   +  V SAQA +   QA++   +    RQ  L+  G T+++ 
Sbjct: 74  IGDVVEKGQTLAAVDPFAAELAVRSAQADLATAQAQLVNASGTANRQRALIETGATTKAT 133

Query: 137 YDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEVGQVVQATVPIF 196
            DSA+    ++Q+A+  AQ+ L  AREQL YT + A   GV+TA  A+VGQVV     + 
Sbjct: 134 LDSAEQGDAAAQAAVVRAQSALTKAREQLSYTKIEAQYAGVVTAVGAQVGQVVNPGQMVA 193

Query: 197 SLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANTGTVQV 256
           ++AR   R+AV +V E L+      AP+TV+L  +P ++  GKVRE+ P     T   +V
Sbjct: 194 TVARPDIREAVIDVAEDLVSVLKIGAPLTVALQLDPRVRVDGKVREIAPQADQVTRARRV 253

Query: 257 KIALQALPKGMELGSVVSATANGPAKASIELPWAALTKDLSEPAVWLID-GDGKAQLHKV 315
           +I L+  P+   LG+ ++    G       LP  A+ +   + +VW+ID   G      V
Sbjct: 254 RITLENPPETFRLGTTITTLIPGKPSRGFRLPATAILRQGDQASVWVIDTAKGSVSKRNV 313

Query: 316 TVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRVEIAQQ 356
            VA    G   + DGL+ G ++V AG   L  G  V   ++
Sbjct: 314 QVAPSDNGTAQVTDGLEAGMRIVTAGVHHLQEGQMVRFERE 354