Pairwise Alignments

Query, 355 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 321 a.a., AI-2E family transporter from Methanococcus maripaludis S2

 Score =  110 bits (276), Expect = 4e-29
 Identities = 82/318 (25%), Positives = 152/318 (47%), Gaps = 24/318 (7%)

Query: 21  AFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFGWNRNLTSLATLSACLIIAILPVIIT 80
           A I++L PF G +  AV +  +  P+   L+ +FG  R   ++     CL+  ++P ++ 
Sbjct: 7   ALIYMLWPFMGIIALAVAVAYMTKPLYDILKPKFG--RTYGAII----CLLGIVIPSLLL 60

Query: 81  SALLVQEGATLYKNIESGKLDVAGYIEQFKNVLPPYFQHLLDRFGMGNLEGLREKIVKSA 140
             L+ ++  T   +     LD+   I +   +L       +D   +         + K  
Sbjct: 61  VVLVAEDVVTFLLS-----LDIENIITKVTPILNDIGYLRVDGPDVSKPFSDIWSVSKPL 115

Query: 141 MQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLYFLLRDGPELVRKVRTAVPLAEPQKRRL 200
           +     FA+Q  S        L+    + ++ ++ L+DG +L       VP  E +KR  
Sbjct: 116 LNS---FASQISSIPS----LLMKLLFLSFMTFYFLKDGDKLTDSFLIYVP--EDKKRNT 166

Query: 201 QL---KFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMAFLSLLPAVGAG 257
            L   + ++ ++    GN + +V  G +  + +W + IP+ +    L   L++LP VG  
Sbjct: 167 ALFLSEIHKALKTLFIGNAVTSVIVGIISIIGYWLIGIPNPITLGALSGILNILPVVGGW 226

Query: 258 IVWGPVAAYFLLSGAIWQGVVLALFGVFVIGLV-DNVLRPILVGKDTKMPDYLILISTLG 316
            ++ P+  Y+LL+G I +G++L LFG+  + L  D  +RP ++ KD  +   L+LI+ L 
Sbjct: 227 TIYVPLTVYYLLTGEIAKGILLGLFGIIFLSLAPDFAIRPRVISKDGDLHPALVLIAFLI 286

Query: 317 GLSVFGLNGFVIGPLVAA 334
           G  VFG+ G  IGP++ A
Sbjct: 287 GPLVFGIPGLAIGPIIVA 304