Pairwise Alignments

Query, 956 a.a., transcriptional regulator from Pseudomonas simiae WCS417

Subject, 1085 a.a., Probable transcriptional regulatory protein (probably LuxR/UhpA-family) from Mycobacterium tuberculosis H37Rv

 Score =  206 bits (524), Expect = 7e-57
 Identities = 199/703 (28%), Positives = 302/703 (42%), Gaps = 73/703 (10%)

Query: 143 IGRNADVALVMERLRQPKLFTIVGPGGVGKTSLAVE-TGHCRAEDDAVHFVDLAQVEGAD 201
           +GR A +  V   +   +L T+ G GGVGKT LA +       E     FVDLA +   D
Sbjct: 198 VGRGAQITEVHRLVTDNRLVTLTGAGGVGKTRLAAQLAAQIAGEFGRAWFVDLAPITDPD 257

Query: 202 LVPIALASSLGIAVQ-AEEPMQVLLAHLRSQRLLLILDNCEHLIDAVCAIVEQIQDAAPG 260
           LVP+ +A +LG+  Q        +L  L  +  L++LDNCEHL+DA  A+V  +  A  G
Sbjct: 258 LVPVTVAGALGLHDQPGRSTTDTVLRFLGGRPALVVLDNCEHLLDATAALVLALVKACRG 317

Query: 261 VTLLATSREPLRARGEHVYRLNPLAFPSELQDLSVEQLLGFPAVQLFVERVCSSNAALAL 320
           V LLAT REPLR  GE  YR+  L+   E             AV++F  R         L
Sbjct: 318 VRLLATCREPLRVEGEVSYRVPSLSLSDE-------------AVEMFCYRAQRVRPDFRL 364

Query: 321 APGDARLIADMCQRLEGMALPIELAAVRVAVHGVHATHALLGERFSLGWAGRRTALPRHQ 380
              ++  + ++C+RL+G+ L IELAA R+    +      L +RF+L   G RTA  R Q
Sbjct: 365 TDDNSAAVTEICKRLDGLPLAIELAAARLRSMTLDEIIDGLRDRFALLTGGARTAAHRQQ 424

Query: 381 TLRAMLDWSYDLLSANERLVFDRLAVFVGPFSLEAASHIAADDWIDPISVAATLDELAAK 440
           TL A +DWSY LL+  ER +F RLAVFVG F ++ A  +A    +    V   +  L  K
Sbjct: 425 TLWASVDWSYTLLTEPERTLFRRLAVFVGCFFVDDAQAVACSGDVQRYQVLDEITLLVDK 484

Query: 441 GLVTVNRSSATASYRLLEMTRAYAREKLQVRGPSEVHALAFRHAAHH---MEQLKHLGET 497
            LV  + +S    YRL E  R YA EKL   G  EV A+  RH  ++     ++ + G +
Sbjct: 485 SLVMADDNSGRTCYRLCETMRHYALEKLSEAG--EVDAVFARHRDYYTALAARVDNPGPS 542

Query: 498 PHAIFASSARLGCQLGNIRSALEWSFGPQGDPGLALPLAAASAQLFLHFSLLVECRTWCT 557
            ++     A    ++ N+R+A  W+     D   AL LA++  ++++    + E R W  
Sbjct: 543 DYSHCLDQAE--TEIDNLRAAFVWN-RENSDTEGALALASSLLRVWMTRGRIQEGRAWFD 599

Query: 558 RATELLELGYFGTPTEMELQAALGLVLMFTKGNSAAAEKALLRALDIAVSLGEHRSQLRL 617
                    +      +  +A     L+    ++AA  +   +AL IA  + E     R 
Sbjct: 600 SILADENARHLEVAAAVRARALADKALLDIFVDAAAGMEQAQQALVIAREVDEPALLSRA 659

Query: 618 LGRLQIFYERIGDFKASLVWAERAVEIGAVIGKPDAIAVAASLAGICYHLLGNQPLARQT 677
           L    +    +    A+  +   A+++   +     +A   +   +   + G+   AR  
Sbjct: 660 LTACGLIAVAVARADAAASYFAEAIDLARAVDDRWRLAQILTFQAVDAVVAGDPVAARPA 719

Query: 678 LEHSLRNSLPSQRSLTIHYGFDHRNRTGLALARTLWLMGFPDQARHGARQVETEAAALDH 737
            + +        R L    G DH N          W +G+    R      E  AAA   
Sbjct: 720 AQEA--------RELAAAIG-DHSNALWCR-----WCLGYAQLMRG-----ELAAAAAQF 760

Query: 738 ATTYCIALVWTLQIYIWTGDLDTAAERLH---TFKSIAEANAFGPYIAAATGFGAAVAIR 794
                              + + + E LH   + + +A A A+   ++AA    A  A+ 
Sbjct: 761 GEV--------------VDEAEASQEVLHKANSLQGLAFALAYQGELSAARA-AADAALE 805

Query: 795 AGRPGNAVAVLEETLARLHGMRYELLTTSFEMALAEGLILAGQ 837
           A   G   A          GM Y  LTT+   ALA G +   Q
Sbjct: 806 AAELGEYFA----------GMGYSALTTA---ALAAGDVQTAQ 835



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 22/173 (12%)

Query: 513  GNIRSALEWSFGPQGDPGLALPLAAA-----SAQLFLHFSLLVECRTWCTRATELLELGY 567
            G++++A   S     +  LALPL+AA     +AQ  L    L   R WC  A + +   +
Sbjct: 829  GDVQTAQHASEAAWRNLSLALPLSAAVQRAFNAQAALAGGDLSAARRWCDDAVQSMTGHH 888

Query: 568  F--------------GTPTEMELQAALGLVLMFTKGNSAAAEKALLRALDIAVSLGEHRS 613
                           G   E E  A   L      G        L     +A   G H +
Sbjct: 889  LAMALATRARIAVAEGKREEAERDAHKALACAAESGAHLDLPDVLECLAGLASDAGTHHA 948

Query: 614  QLRLLGRLQIFYERIGDFKASLVWAERAVEIGAV---IGKPDAIAVAASLAGI 663
              RL G  +   ++IG  + ++  ++    + A+   +G+ D  A  A  A +
Sbjct: 949  AARLFGAAEAIRQQIGSVRFAIYRSDYVQSVTALRDAMGEKDFDAAWAEGAAL 1001