Pairwise Alignments

Query, 520 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 508 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  144 bits (362), Expect = 1e-38
 Identities = 128/464 (27%), Positives = 207/464 (44%), Gaps = 32/464 (6%)

Query: 48  WLAAVHPDDLPATLNSWREAVRNGEPYRKELRLQQADGGYRWFVSDGKPMRDNHDRIIRW 107
           +++ V PDD      + ++++ +G+      R+ + D    W  + G  + ++    +  
Sbjct: 62  FISLVDPDDREQIALALQQSIEHGDKIDVMYRVAEKDRPSHWLRARGGVVHEDGASYLCG 121

Query: 108 WVVSVDIDEHKRDKALIAHALAEVSASEDRLSNIINAIPGFVWSAAPDGSVGFVNQRWCD 167
            V+  DID+ K  +        E+   + +L +I++ +P  +      G + F ++    
Sbjct: 122 IVL--DIDQQKVLEQ-------ELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAER 172

Query: 168 YTGMSLDEARGNGWARSVHPDDAEQLARYWGALLRSGEAGEYE-ARL---RRFDGDYRWF 223
             GMS  EA G   +  +   DA +   Y      +GE       R+   RR DG    F
Sbjct: 173 MFGMSEREAIGQNISVLMPRPDATRHDNYIDRYNNTGERHIIGIGRIVTGRRKDGST--F 230

Query: 224 LVRAVPQRDEWGAVLRWYGENTDIEDRKRAEMLAASIAVERQLSEETLSKVRSELAHLAR 283
            +       E G    + G   D+               E Q ++  L ++++EL H++R
Sbjct: 231 PIHLSIGEMESGGERYFTGFIRDL--------------TEYQQTQARLHELQAELVHVSR 276

Query: 284 VASLSTVTASIAHEVNQPLAGIITNASTCLRML-GADPPNVTGALETARRTIRDGNRAAE 342
           + ++  + +++AHE+NQPL+ I        R+L G+  PN         R      RA +
Sbjct: 277 LTAMGEMASALAHELNQPLSAISNYMKGSRRLLAGSTDPNTVKIESAMERAAEQALRAGQ 336

Query: 343 VINRLRALFSKKCITLEPVDLNEAAREVIAMLLGELQRNDVKLHPEFADALPTVKADRVQ 402
           +I RLR   ++         L +   E  A+ L   +   V L      A   V  DRVQ
Sbjct: 337 IIRRLRDFVARGESEKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPAHDLVLVDRVQ 396

Query: 403 LQQVILNMILNATEAMNTMTGRSRHLHVTTGLDEHQGVYLAVKDNGNGFDPRDAERLFQA 462
           +QQV++N+  NA EAM       + L           V + V D G+G   +   +LFQ 
Sbjct: 397 IQQVLVNLFRNALEAM--ANSDKKELSAGNARVADDMVEVTVSDTGSGLPEQVKAKLFQT 454

Query: 463 FYTTKTTGMGIGLSISRSIIERHDGVLWATAHSGPGATFQFALP 506
           F+TTK TGMG+GLSISRSIIE H G +WA  +S  GATF+F LP
Sbjct: 455 FFTTKETGMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLP 498