Pairwise Alignments

Query, 520 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 662 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  146 bits (369), Expect = 2e-39
 Identities = 111/357 (31%), Positives = 165/357 (46%), Gaps = 23/357 (6%)

Query: 155 DGSVGFVNQRWCDYTGMSLDEARGNGWARSVHPDDAEQLARYWGALLRSGEAGE--YEAR 212
           DG + +VN  +C  +G   DE  G+         D+        AL+ +G A    +EA 
Sbjct: 320 DGRITYVNPAFCRMSGYRADELVGHSPPLPYWNPDSLDTHEEQNALVLTGHAPNEGFEAS 379

Query: 213 LRRFDGDYRWFLVRAVPQRDEWGAVLRWYGENTDIEDRKRAEMLAASIAVERQLSEETLS 272
           +R  DG     +V A P  D  G    W     DI +RK+A+      A++RQ  E+   
Sbjct: 380 IRHRDGHIVHTMVYATPLIDAHGKQTGWISSVVDISERKKAQ------ALQRQQQEK--- 430

Query: 273 KVRSELAHLARVASLSTVTASIAHEVNQPLAGIITNASTCLRMLGADP---PNVTGALET 329
                L   AR+ ++  + +++AHE+NQPL+ I +  + CL  L A       ++GAL  
Sbjct: 431 -----LEQTARLVTMGEMASTLAHELNQPLSAIASYTTGCLNRLEAGDYTREEISGALN- 484

Query: 330 ARRTIRDGNRAAEVINRLRALFSKKCITLEPVDLNEAAREVIAMLLGELQRNDVKLHPEF 389
             +      RA  +I R+     ++        L E   + IA +    ++  V +    
Sbjct: 485 --KLALQAQRAGRIIRRVHDFVRRREPQRVICHLEEVIEDSIAFIEPLARKQQVHMLRLV 542

Query: 390 ADALPTVKADRVQLQQVILNMILNATEAMNTMTGRSRHLHVTTGLDEHQGVYLAVKDNGN 449
              LP + AD V L QV++N++ N  +AM       R L V   L   Q V + + D G 
Sbjct: 543 PAHLPKLLADPVLLGQVLINLMRNGIDAMAATPPERRQLIVEAQLLGDQ-VEVCIADRGC 601

Query: 450 GFDPRDAERLFQAFYTTKTTGMGIGLSISRSIIERHDGVLWATAHSGPGATFQFALP 506
           G  P  AE+LF  F+TTKT GMG+GL+I RS+IE H G LW    +  G  F F LP
Sbjct: 602 GIPPEVAEKLFSPFFTTKTEGMGMGLNICRSVIEFHGGRLWFEPGAEGGTVFIFTLP 658



 Score = 35.4 bits (80), Expect = 7e-06
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 22  DGNVDYVNQGWCAYTGRSANAATG-SGWLAAVHPDDLPATLNSWREAVRNGEPYRK--EL 78
           DG + YVN  +C  +G  A+   G S  L   +PD L  T       V  G    +  E 
Sbjct: 320 DGRITYVNPAFCRMSGYRADELVGHSPPLPYWNPDSLD-THEEQNALVLTGHAPNEGFEA 378

Query: 79  RLQQADGGYRWFVSDGKPMRDNHDRIIRWWVVSVDIDEHKRDKAL 123
            ++  DG     +    P+ D H +   W    VDI E K+ +AL
Sbjct: 379 SIRHRDGHIVHTMVYATPLIDAHGKQTGWISSVVDISERKKAQAL 423