Pairwise Alignments
Query, 520 a.a., histidine kinase from Pseudomonas simiae WCS417
Subject, 901 a.a., PAS domain S-box from Dechlorosoma suillum PS
Score = 156 bits (395), Expect = 3e-42
Identities = 140/503 (27%), Positives = 217/503 (43%), Gaps = 56/503 (11%)
Query: 22 DGNVDYVNQGWCAYTGRSANAATGSGWLAAVHPDDLPATLNSWREAVRNGEPYRK--ELR 79
+G + YVN +C G S G P + L + E G+ K E R
Sbjct: 434 EGRIIYVNPAFCRMLGWSEAELLGLKPPFPYWPPEHARQLATNIELTLAGQAPAKGFEQR 493
Query: 80 LQQADG---GYRWFVSDGKPMRDNHDRIIRWWVVSVDIDEHKRDKALIAHALAEVSASED 136
+ + +G R+++S P+ D + + W DI E KR + E+ S++
Sbjct: 494 VMRKNGERMDVRFYIS---PLIDANGKQTGWMGAMTDITEPKRVRG-------ELERSQE 543
Query: 137 RLSNIINAIPGFVWSA-APDGSVGFVNQRWCDYTGMSLDEARGNGWARSVHPDDAEQLAR 195
R +++ + V+ A A + F N+ + G D N W + E
Sbjct: 544 RFMAVLDGLDSAVYVADAKSDEILFGNRAFKSIFGF--DAVGRNCW------EVTEACRP 595
Query: 196 YWGALLRSGEAGEYEARLRRFDGDYRWFLVRAVPQRDEWGAVL-----RWYGENTD---- 246
GA FD D R +P++ G V RWY +
Sbjct: 596 PVGA----------------FDCDLRLLSPEVLPRQLFDGEVQNSLSGRWYHLHDRAIRW 639
Query: 247 IEDRKRAEMLAASIAVERQLSEETLSKVRSELAHLARVASLSTVTASIAHEVNQPLAGII 306
++ R + I +Q+ E L + + L +R+ ++ + +S+AHE+NQPLA I
Sbjct: 640 VDGRVVRVQIGTDITERKQIEEVNLQQ-QKRLEQTSRLITMGEMASSLAHELNQPLAAIA 698
Query: 307 TNASTCLRML---GADPPNVTGALETARRTIRDGNRAAEVINRLRALFSKKCITLEPVDL 363
C++ + A P + GA+E A RA ++I R+R K V L
Sbjct: 699 NYCMGCVKRMKGGAAKPEELLGAMEKAS---FQAERAGKIIRRMREFVKKNEPNRGQVLL 755
Query: 364 NEAAREVIAMLLGELQRNDVKLHPEFADALPTVKADRVQLQQVILNMILNATEAMNTMTG 423
+ E + E ++ V + + LP + ADR+ ++QV+LN++ N EAM
Sbjct: 756 GDIVEEALGFAEIEARKLGVNICVDLPPELPPLFADRIMIEQVLLNLVKNGIEAMRDTLP 815
Query: 424 RSRHLHVTTGLDEHQGVYLAVKDNGNGFDPRDAERLFQAFYTTKTTGMGIGLSISRSIIE 483
R L V+ L ++ + +AV D G+G AE LF FYTTK GMG+GL I RSIIE
Sbjct: 816 AERRLTVSATLPDNHSLEVAVADRGHGLGSTTAEELFAPFYTTKPEGMGMGLPICRSIIE 875
Query: 484 RHDGVLWATAHSGPGATFQFALP 506
H G LWA A+ G G F+F LP
Sbjct: 876 YHKGRLWADANPGGGTVFRFTLP 898
Score = 52.8 bits (125), Expect = 5e-11
Identities = 78/337 (23%), Positives = 124/337 (36%), Gaps = 30/337 (8%)
Query: 4 EFDRVVDALPGVAFTALADGNVDYVNQGWCAYTGRSANAATGSGWLAAVHPDDLPATLNS 63
E DR+ G+ A +G + VN + G L VHPDD+ ++
Sbjct: 295 ERDRLFSLSLGLQCIATLEGKLRRVNPAFERVLGYPLGELRDRSLLDFVHPDDMALVVDM 354
Query: 64 WREAVRNGEPYRKELRLQQADGGYRWFVSDGKPMRDNHDRIIRWWVVSVDIDEHKRDKAL 123
R + G E R A+G +W + P+ + ++++ + V+ DI + K +
Sbjct: 355 LRH-LAEGAAQEFECRFHSANGQDKWLLWSINPVPE--EKLL--YAVAHDITDRKTAEQA 409
Query: 124 IAHALAEVSASEDRLSNIINAIPGFVWSAAPDGSVGFVNQRWCDYTGMSLDEARG----- 178
+ A A E+ +S + AI +G + +VN +C G S E G
Sbjct: 410 LTDEYAFRKAMEESVSTGLRAID-------MEGRIIYVNPAFCRMLGWSEAELLGLKPPF 462
Query: 179 NGWARSVHPDDAEQLA-RYWGALLRSGEAGEYEARLRRFDGDYRWFLVRAVPQRDEWGAV 237
W P+ A QLA L A +E R+ R +G+ P D G
Sbjct: 463 PYWP----PEHARQLATNIELTLAGQAPAKGFEQRVMRKNGERMDVRFYISPLIDANGKQ 518
Query: 238 LRWYGENTDIEDRKRAEMLAASIAVERQLSEETLSKVRSELAHLARVASLSTVTASIAHE 297
W G TDI + KR + E + S+E V L VA + +
Sbjct: 519 TGWMGAMTDITEPKR-------VRGELERSQERFMAVLDGLDSAVYVADAKSDEILFGNR 571
Query: 298 VNQPLAGIITNASTCLRMLGADPPNVTGALETARRTI 334
+ + G C + A P V GA + R +
Sbjct: 572 AFKSIFGFDAVGRNCWEVTEACRPPV-GAFDCDLRLL 607
Score = 41.2 bits (95), Expect = 2e-07
Identities = 42/156 (26%), Positives = 60/156 (38%), Gaps = 15/156 (9%)
Query: 122 ALIAHALAEVSASEDRLSNIINAIPGFVWSAAPDGSVGFVNQRWCDYTGMSLDEARGNGW 181
AL+ + +E + + G A +G + VN + G L E R
Sbjct: 280 ALLRRDVQRRLQAEKERDRLFSLSLGLQCIATLEGKLRRVNPAFERVLGYPLGELRDRSL 339
Query: 182 ARSVHPDD---AEQLARYWGALLRSGEAGEYEARLRRFDGDYRWFL--VRAVPQRDEWGA 236
VHPDD + R+ L G A E+E R +G +W L + VP+ A
Sbjct: 340 LDFVHPDDMALVVDMLRH----LAEGAAQEFECRFHSANGQDKWLLWSINPVPEEKLLYA 395
Query: 237 VLRWYGENTDIEDRKRAEMLAASIAVERQLSEETLS 272
V DI DRK AE R+ EE++S
Sbjct: 396 VAH------DITDRKTAEQALTDEYAFRKAMEESVS 425