Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 544 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  295 bits (755), Expect = 3e-84
 Identities = 196/561 (34%), Positives = 303/561 (54%), Gaps = 24/561 (4%)

Query: 4   SLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVAM 63
           SL++  +S  +  +L+ ++V+  T   ++  Q  ++        L  AK     +V    
Sbjct: 3   SLRSVSISRRLWLILVVSIVMLFTLGALMLKQIHSD--------LYQAKVQKTQHVVQTA 54

Query: 64  STIKPLYDAAAPGDT----AARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVG 119
           S +   Y       T    AA+ Q +  +    Y +  YF+  D   + +    +P   G
Sbjct: 55  SGVLTYYQGLEAAGTLTRDAAQKQALSAVRGLRYNQTDYFWINDLTPVMIMHPTNPKLEG 114

Query: 120 KSFKDNRDPNGVYVNRDLVKVGKD-GTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIG 178
           ++    RDPNG  +  ++V + K  G   + Y   +PG    V K  Y +    W  +IG
Sbjct: 115 QNLSAIRDPNGYALFNEMVAIAKSKGAGMINYLWPKPGAEAPVGKTSYVQLFEPWGWIIG 174

Query: 179 TSVNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMK 238
           + V +D ++A+          + + +  S++G+ + LL+ +     L+  +I+ PL    
Sbjct: 175 SGVYVDDVQAEF---------QSQVIKASVVGLVITLLMGLLLT--LIVRSIVGPLQETV 223

Query: 239 ANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQV 298
             + +IA+GE DLTR L    QDE+  LA  FN F  K+  +V Q+    S L    S++
Sbjct: 224 NAMANIASGESDLTRTLDTHGQDEVTQLARHFNAFTAKLRQVVTQLQASASALGQSSSEL 283

Query: 299 SDQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVV 358
            + A ++++  ++Q  + + VATAIN+++   Q+VA++A+ A+   +  +++ Q  +  +
Sbjct: 284 GNDAAQAQERSQQQSQQMELVATAINEVTYGVQDVAKNAEHAANEMRDAESQAQQGQVNI 343

Query: 359 DGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAG 418
           DGS+ QI  L   I  +   + +L  + + I SVL VIRSIAEQTNLLALNAAIEAARAG
Sbjct: 344 DGSLQQIDRLSQTIDQAVEVIRTLASESTQIGSVLEVIRSIAEQTNLLALNAAIEAARAG 403

Query: 419 EAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQAN 478
           E GRGFAVVADEVR LA RTQ ST EIQ MI+RLQT +EAAV+ +  SS A   T  QA 
Sbjct: 404 EQGRGFAVVADEVRLLAQRTQKSTAEIQAMIERLQTHSEAAVKVIGDSSRASQLTIEQAG 463

Query: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538
            AGASL+ + Q +  +NS+NA IASA  +Q  V E+IN++V Q A    S A   +  +Q
Sbjct: 464 LAGASLNAIGQALRNLNSLNASIASATLQQAHVVEDINQNVTQAAGLSHSTAMAAEQSSQ 523

Query: 539 TSRSLAELGQRLGQLVGQFRI 559
            S  L  L ++L  L+ QFR+
Sbjct: 524 ASTRLKALSEQLNGLLTQFRV 544