Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  241 bits (614), Expect = 8e-68
 Identities = 166/508 (32%), Positives = 261/508 (51%), Gaps = 49/508 (9%)

Query: 95  KDGYFFGYDSE--------------------TIRLFKGNSPDGVGKSFKDN--------- 125
           +DG+FFG+                         +L  GN+  G+ KS  D          
Sbjct: 143 QDGWFFGFIGSGKPTMVSMFQEANGEVKMFANYQLVNGNTMSGMSKSMDDMVRLLNSFKI 202

Query: 126 RDPNGVYVNRDLVKVGKDGTHYLQYSSTQP----GQTELVPKMGY----TEYLPKWDMVI 177
            D   V++     +V          SS Q     G + L+ K G+    T+Y  + + V+
Sbjct: 203 EDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASALLNKSGFNLISTDY--QGEEVM 260

Query: 178 GTSVNLDGIE------AQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTIL 231
             S+ ++ ++        V  V A++    + ++L+ L VA + + +    G+ LAN+I 
Sbjct: 261 VASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFM----GIFLANSIA 316

Query: 232 RPLHLMKANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQL 291
            P++ +     D+  G+GDL++R+ +   DE+  L+  FN F++KIH  ++ + + + +L
Sbjct: 317 MPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSREL 376

Query: 292 TGLVSQVSDQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEG 351
                 VS +A  +    ++QR +T QV TAINQM +   E+A +A  A+  A Q     
Sbjct: 377 QVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATAAETANQASGNA 436

Query: 352 QAAKRVVDGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAA 411
              + VV+ +   I  L +DI ++G  ++ L      I S+L  IR I+EQTNLLALNAA
Sbjct: 437 DQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAA 496

Query: 412 IEAARAGEAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGD 471
           IEAARAG+ GRGFAVVADEVR LASRT +ST+EIQ MI++LQ   + AV AM        
Sbjct: 497 IEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTH 556

Query: 472 GTSAQANEAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVAD 531
              A ++EA   L +++  I  I+  N Q+A+A EEQ+ V   IN+++ +I    +    
Sbjct: 557 QGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTS 616

Query: 532 ETQLGAQTSRSLAELGQRLGQLVGQFRI 559
             +  A  S+SL EL  RL +LVG F++
Sbjct: 617 TAEELADASKSLRELSGRLDKLVGNFKL 644