Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 556 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  288 bits (737), Expect = 4e-82
 Identities = 185/561 (32%), Positives = 300/561 (53%), Gaps = 27/561 (4%)

Query: 3   LSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVA 62
           LS++ ++  L VV ++L A+  ++             V++ R  L+ + +   Q  VE A
Sbjct: 19  LSIRNRLFLLTVVILVLLAIPFAIM------------VKDYRHDLMLEKQVQTQHLVESA 66

Query: 63  MSTIKPLYDAAAPGD-TAARAQ--VVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVG 119
            + ++     A  G  T  +AQ    + ++   YG + YF+  D++   +     PD  G
Sbjct: 67  YTLLEHYAQQATQGTLTTEQAQNTAKQAIAQLRYGANDYFWINDAQPAMVMHPMKPDLNG 126

Query: 120 KSFKDNRDPNGVYVNRDLVKVGKDGTH-YLQYSSTQPGQTELVPKMGYTEYLPKWDMVIG 178
           K  +  +DPNG  +  ++V V +      ++Y   +PG  + V K+ Y +    W  +IG
Sbjct: 127 KDLRSFKDPNGKALFVEMVNVTQRNQQGVVEYQWPKPGAEQPVDKVSYVKLFKPWGWIIG 186

Query: 179 TSVNLDGIEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMK 238
           T + +D        V A V +R+  +L+ ++G  +VL+++ + +G     +I +P     
Sbjct: 187 TGIYVDD-------VNALVMQRLSSILVWVVGTLLVLIVLASLIG----RSITQPCEETL 235

Query: 239 ANLDDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQV 298
           A L +IA GEGDLTR+L +T +DEL  +A AFN F +KI  ++++IT +T  +TG   ++
Sbjct: 236 ATLKNIAQGEGDLTRQLTVTGKDELAQIAQAFNLFTNKIRHIIQEITPITESVTGSADEL 295

Query: 299 SDQAQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVV 358
           +  AQ +      Q    D VA+A+NQ+ ++ QEVA+SA  A  AA   +      + ++
Sbjct: 296 TQVAQSASSKAYDQHQAVDTVASAMNQLHASNQEVAQSAHQAEQAAHSANQAASQGREMI 355

Query: 359 DGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAG 418
             +  Q+ +L + +  +      L  +  S+ +VL VIR +AEQTNLLALNAAIEAARAG
Sbjct: 356 TLTSTQMQSLRDQLTRTEQETQVLASETQSVSAVLEVIRGVAEQTNLLALNAAIEAARAG 415

Query: 419 EAGRGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQAN 478
           E GRGFAVVADEVR LA+RTQ ST EI+ +I +LQ   ++  ++M ++      T  QA 
Sbjct: 416 EQGRGFAVVADEVRTLATRTQASTNEIEQIIAQLQKKAQSVSQSMTQTQQQSRVTQQQAE 475

Query: 479 EAGASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQ 538
           +A   L+ +   I TI S N  IA A+ +Q+   +EI R++ QIA      + +    A 
Sbjct: 476 QAQQMLNEIEAQIKTILSFNQHIAGASAQQSEATDEITRNLTQIAEHSTQASAQANQVAA 535

Query: 539 TSRSLAELGQRLGQLVGQFRI 559
            S  L E GQ L + +  F+I
Sbjct: 536 ASEQLMENGQHLARSLAVFKI 556