Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  374 bits (959), Expect = e-108
 Identities = 209/558 (37%), Positives = 334/558 (59%), Gaps = 4/558 (0%)

Query: 3   LSLKAKVLSLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVA 62
           L  + K+L L V+P+++   ++            + E+E  R  L++  K  LQ+Y+ + 
Sbjct: 10  LRSRTKLLLLTVIPLIVITALVMAVNYQSGLSTLQKELENYRTDLIDAKKKELQAYLMMG 69

Query: 63  MSTIKPLYDAAAPGDTAARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGKSF 122
           ++ +KPLY++   G+  A+A+  ++L    +  DGYFF YDS+ +       P+  GK+ 
Sbjct: 70  VTAVKPLYESDKAGENQAQAK--QILKAMRFDSDGYFFAYDSQGVNTLHAIKPELEGKNL 127

Query: 123 KDNRDPNGVYVNRDLVKVGKDGTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGTSVN 182
              +D NGV V   L+   K G  +L +S  +P      PK+GY EYLPKWD V+GT + 
Sbjct: 128 YGMKDENGVAVIAGLIDASKTGDGFLYFSWHKPTINAQAPKLGYAEYLPKWDWVLGTGIY 187

Query: 183 LDGIEAQVAVVEAKVQKRMEGVLLSILGVAVV-LLLVIAAVGMLLANTILRPLHLMKANL 241
           +D ++ QVA   A+ +  +   ++S +G++VV L+  I AV +L++  I  PL  + ++L
Sbjct: 188 IDDVDTQVAEFRAQREADLYDQMISAIGLSVVGLVFTIIAVSVLVSRGI-APLQHVVSSL 246

Query: 242 DDIAAGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQVSDQ 301
             +AAG GDLT R+ + SQDE+GD+A AFN F+DK+H L+  I    + +     ++  Q
Sbjct: 247 QAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLHPLMTDIRASANTVEAAAQELDQQ 306

Query: 302 AQRSEQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVVDGS 361
             ++   M+    ETD+V  A+ +MS+ A+EVA +    + A +  +++   A++ V+ +
Sbjct: 307 TSQASHKMDGHCLETDKVVAAVTEMSATAREVASNTYSTAQAIESANSQIAVAQKEVNLA 366

Query: 362 IAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAGEAG 421
           I  I  LVN++  +  ++  L Q  + I  VL VI  IAEQTNLLALNAAIEAARAGE G
Sbjct: 367 IDGIGELVNEVNQTSAAVGDLSQQAAKITQVLKVIGDIAEQTNLLALNAAIEAARAGEQG 426

Query: 422 RGFAVVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQANEAG 481
           RGFAVVADEVR+LASRTQ ST+EI  M++ L  G   AV++M  S + G+ T+ ++ +  
Sbjct: 427 RGFAVVADEVRSLASRTQNSTKEIGEMLNALHQGVSKAVQSMNISQERGEKTALESVQIK 486

Query: 482 ASLDTMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTSR 541
            SL  +++ +  I+ M  Q ASAAE+Q+AVAE+IN+++  I   V+ +++  +     S 
Sbjct: 487 ESLAGISKAVSLIHDMGIQTASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSA 546

Query: 542 SLAELGQRLGQLVGQFRI 559
           SL+  GQ++G LVG F++
Sbjct: 547 SLSHSGQQMGTLVGHFKL 564