Pairwise Alignments

Query, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 543 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  294 bits (752), Expect = 7e-84
 Identities = 197/554 (35%), Positives = 299/554 (53%), Gaps = 20/554 (3%)

Query: 11  SLAVVPVLLFAVVISLTTVWILQGQARNEVEETRQRLLNDAKATLQSYVEVAMSTIKPLY 70
           SL++   L   +V+S+  +++L      ++       L  AKA    +V    S I   Y
Sbjct: 5   SLSISRRLWLILVVSVLMLFVLSATLLRQLHND----LYQAKAEKTMHVVQTASGILSFY 60

Query: 71  DA--AAPGDT--AARAQVVKLLSNTSYGKDGYFFGYDSETIRLFKGNSPDGVGKSFKDNR 126
               AA G T  AA+ Q +K + +  Y +  YF+  D   + +    +    G+     +
Sbjct: 61  QGLEAAGGMTREAAQQQALKEIKSLRYSQSDYFWINDLRPVMIMHPTNAKLEGQDLSTIK 120

Query: 127 DPNGVYVNRDLVKVGK-DGTHYLQYSSTQPGQTELVPKMGYTEYLPKWDMVIGTSVNLDG 185
           DP+G  V  ++V + K  G   + Y   +PG +E V K  Y +    W  ++G+ V +D 
Sbjct: 121 DPDGFAVFNEMVTLVKAQGAGMVNYRWPKPGASEPVKKTSYVQLFQPWGWILGSGVYVDD 180

Query: 186 IEAQVAVVEAKVQKRMEGVLLSILGVAVVLLLVIAAVGMLLANTILRPLHLMKANLDDIA 245
           + A     E K Q    G+ ++ + + +VLLLV       +  +I+RPL      +  IA
Sbjct: 181 VAA-----EFKTQLWNAGMFIAGIVLIMVLLLVT------IVRSIVRPLRAAVGAMASIA 229

Query: 246 AGEGDLTRRLAITSQDELGDLAGAFNRFVDKIHGLVRQITEMTSQLTGLVSQVSDQAQRS 305
           +GE DLTR L     DE+ +L   FN FV K+  +V Q+      L    + +   A+++
Sbjct: 230 SGESDLTRTLETHGNDEITELGTHFNAFVAKLRNVVGQLQHSAVALGQASTDLGSDAEQA 289

Query: 306 EQAMERQRHETDQVATAINQMSSAAQEVARSAQGASVAAQQTDAEGQAAKRVVDGSIAQI 365
           +   E+Q  + D VATA+N+++   Q+VA++A+ A+   +  +++ Q  +  +D S+ QI
Sbjct: 290 QSRSEQQSQQMDLVATAVNEVTYGVQDVAKNAEHAASEMRDAESQAQQGQINIDNSLRQI 349

Query: 366 HALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAAIEAARAGEAGRGFA 425
             L + I  +   + SL  + + I SVL VI SIAEQTNLLALNAAIEAARAGE GRGFA
Sbjct: 350 EHLSSTIGQAVQVMQSLASESTQIGSVLEVISSIAEQTNLLALNAAIEAARAGEQGRGFA 409

Query: 426 VVADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQANEAGASLD 485
           VVADEVR LA RTQ ST EIQ MI+RLQ  ++AAV+ +  SS +   T  QAN+AG SL 
Sbjct: 410 VVADEVRLLAQRTQKSTAEIQSMIERLQKHSDAAVKVIGDSSRSSQLTIEQANQAGQSLT 469

Query: 486 TMAQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTSRSLAE 545
           +++Q +  +NS+NA IASA  +QT V ++IN++V Q A    S A   +     S  L  
Sbjct: 470 SISQALRNLNSLNASIASATLQQTHVVDDINQNVTQAAQLSQSTALAAEQSTSASLHLRG 529

Query: 546 LGQRLGQLVGQFRI 559
           L + L  L+ QFR+
Sbjct: 530 LSEELNTLLKQFRV 543