Pairwise Alignments

Query, 440 a.a., sodium:proton antiporter from Pseudomonas simiae WCS417

Subject, 439 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  506 bits (1303), Expect = e-148
 Identities = 257/440 (58%), Positives = 337/440 (76%), Gaps = 2/440 (0%)

Query: 2   INAVIAAVGTMLVLSLSRVHVVIAIIVGALVGGLTGGLGIDATLKAFNGGLGGGATVALS 61
           +NAV+ AV  ML LSL+RV+VV+A+ + ALV GL GG+ +  T+ AFN GLGGGA +ALS
Sbjct: 1   MNAVVIAVCLMLALSLARVNVVVALTISALVAGLVGGMDLHRTIDAFNTGLGGGAQIALS 60

Query: 62  YALLGAFAVAIAKSGLAHALADKALLLVDRQ-DASGGGHVKWLLIGLLWVVAIASQNILP 120
           YALLGAFAVA++ SGL   +++  +  + R+ +A+    V+WLL+  L  +++ASQNILP
Sbjct: 61  YALLGAFAVALSHSGLTTLISNSIIKSLGREPNATNTNWVRWLLLLSLLAMSMASQNILP 120

Query: 121 IHIAFIPLLVPPLLYVLTKLQLDRRLIACVMTFGLITPYMFLPVGFGNIFLNQILLANVA 180
           IHIAFIP+LVPPLL+V+TKL +DRRL+ACV+TFGL+T YM LPVGFG IFLN ILL+N+ 
Sbjct: 121 IHIAFIPILVPPLLHVMTKLNIDRRLVACVLTFGLVTTYMILPVGFGGIFLNDILLSNLT 180

Query: 181 KSGVDISQVNVTHAMSLPALGMVVGLLVAVFISYRKKRVYDLEKIERVEQVAVQYNPLTL 240
            +G+   +  +  AM +PA GMVVGLL+AVF+SYRK RVYD  K+   E    + N   +
Sbjct: 181 SNGLVAVRDQIPPAMLIPAAGMVVGLLIAVFVSYRKPRVYDETKVLSAEPEE-KLNKRNI 239

Query: 241 LVAGLAIASAFIIQLWLDSMIIGALAGFLIFSVSGIVRWRDTDDLFTEGMKMMAMIGFIM 300
           ++A LAI +   +QL  DSMI GAL GF+IFS SG ++     D+FT+G++MMA IGFIM
Sbjct: 240 VIAALAILATLFVQLETDSMIFGALVGFMIFSFSGALKHVADQDIFTQGVRMMANIGFIM 299

Query: 301 IASSGFAEVLKATGDVRSLVETSAAFIGHNRGVGALLMLLVGLLVTMGIGSSFSTVPILA 360
           I+++GFA V+K TG+V +LV + ++ IG N+ + A LML+VGLL+TMGIGSSFST+PI+A
Sbjct: 300 ISAAGFAAVVKETGEVGTLVSSLSSLIGDNKALAAFLMLVVGLLITMGIGSSFSTIPIIA 359

Query: 361 AIFVPLCVQLGFSPVAIVCIVGTAGALGDAGSPASDSTLGPTSGLNVDGQHHHIWDTVVP 420
            I+VPL +  GFS  A + +VGTA ALGDAGSPASDSTLGPTSGLN DGQH HI D+V+P
Sbjct: 360 TIYVPLALSFGFSVPATIALVGTAAALGDAGSPASDSTLGPTSGLNADGQHDHIRDSVIP 419

Query: 421 TFLHYNLPLLAFGWLAAMTL 440
           TF+HYN+PLL FGW+AAM L
Sbjct: 420 TFIHYNIPLLVFGWIAAMVL 439