Pairwise Alignments

Query, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (661), Expect = 4e-73
 Identities = 174/533 (32%), Positives = 288/533 (54%), Gaps = 29/533 (5%)

Query: 188 KANAWFTCPRTLLKPCVIEPYFYRINGQNVLMTSIVFPLMANGKVI----ASLSVDINLN 243
           +   W+   +   KP   EPY   +  Q +++T +  P+   G++I    ++L++D  + 
Sbjct: 131 RVRGWYKEAKAAGKPITTEPYV-SVTMQTLVVT-LAEPVRYQGQLIGVAASNLALDKLIK 188

Query: 244 SLQAVSQQASQKLYDGQTQVSILSPTGLLAGYSPDASKLSQRLDQVDTANGAQLIGALAS 303
            + A+          G+    +++  G +  + P    + +  +++        +   A 
Sbjct: 189 DVLAIE-------VPGKGYAILVNQKGKIVAH-PTQDLILKPTEEMSAQLTISKLNIAAK 240

Query: 304 STHIRSLRTDHQLKVLAPFAPIPEGKPWGVLLDVPEKVLVGPAEALKAQMDAENTRGTLL 363
              +  L  D + KVL   A       W +++ + + VL  P   +            ++
Sbjct: 241 DHSLFQLSMDGRDKVL--MAEEVANTDWLLVMVMDKGVLEQPLNDM-----------LMV 287

Query: 364 ELGLGL-LAAVVGLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDELGQL 422
           ++G+GL +  V+ L+  W +AR +   +  +A+ L DIA G+GDLTRRL    QDE+G L
Sbjct: 288 QIGIGLGILLVMALLTSWFVARQLNE-LGNIANALADIAEGDGDLTRRLDVRSQDEVGLL 346

Query: 423 AGWFNRFLDKLQPIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASHEM 482
           A  FN+F+D+L  ++  V+         AD +AA ATQ S  +  Q  ++  VATA  EM
Sbjct: 347 ADKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEM 406

Query: 483 SATAQDVARSAAQAAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLAANS 542
           ++   ++A +A   A+ A  + Q   DG   ++ +  +I  LA +++ A+  +  L  ++
Sbjct: 407 ASATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHA 466

Query: 543 EKIGSVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETR 602
            +I ++L  IRGIAEQTNLLALNAAIEAARAGE GRGFAVVADEVR L+QRT  S EE +
Sbjct: 467 NEISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQ 526

Query: 603 LVIEHLQNGTEAVVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASAAE 662
             I  LQ  T   V  M  S++  + SV  V Q   +L+ I +A+  ISDM  QIASAAE
Sbjct: 527 TKIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAE 586

Query: 663 EQSAVAEEINNNVATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV 715
           EQS V  +IN N  ++R+V++ L+E+A +S + +++L+++A +    + +F++
Sbjct: 587 EQSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFKL 639