Pairwise Alignments

Query, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  276 bits (706), Expect = 2e-78
 Identities = 213/641 (33%), Positives = 336/641 (52%), Gaps = 52/641 (8%)

Query: 85  RQVLFLREQAEKRFLDAFDTREDLTRQVKAALQAN-PDLLGLSL-VFEANALDGKDELFA 142
           +Q+  +RE+ E    D+     ++ + VK  ++++     GL+    E   LD  ++ FA
Sbjct: 25  QQLSTVREEIESLVQDSL---MEMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFA 81

Query: 143 GQAELGSNDKGRFAL----YWSQPTPGKLESMALPESDMSDTSVGPSGEKANAWFTCPRT 198
                  N KG F      Y S  T  + +    P +D           +   W+   + 
Sbjct: 82  KSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNADYDP--------RKRPWYVDAKR 133

Query: 199 LLKPCVIEPYFYRINGQNVLMTSIVFPLMANGKVIASLSVDINLNSLQAVSQQASQKLYD 258
             K  V EPY   I+ + +++ SI  P+      + ++  D+ L  L  +    S  L+D
Sbjct: 134 ERKLVVTEPYV-DISTKKIII-SIGTPVYQQSNFVGAMFYDVELTQLAQLVN--SVNLFD 189

Query: 259 GQTQVSILSPTGLLAGYSPDAS----KLSQRLDQVDTANGAQLIGALASSTHIRSLRTDH 314
               + I +  G+   + P+A     K SQ L  VD   G Q I              D 
Sbjct: 190 AG-YLFITTKDGVTIAH-PNAENNGEKFSQFLPNVDLKEGTQRI------------ELDG 235

Query: 315 QLKVLAPFAPIPEGKPWGVLLDVPEKVLVGPAEALKAQMDAENTRGTLLELGLGLLAAVV 374
           +   L  FA +P  + W +   V E +     + L+          +L+   +G+L +++
Sbjct: 236 KY-YLVKFAQVPS-ESWYIGAVVDESIAFAMVDDLR--------HSSLIYTVIGVLLSII 285

Query: 375 GLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDELGQLAGWFNRFLDKLQ 434
           GL     + + + +P+  ++  +ED+ASG+GDLT+RL  +   E   LA  FN F + LQ
Sbjct: 286 GLSF---LIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQ 342

Query: 435 PIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASHEMSATAQDVARSAA 494
             I  +K    +     +Q+   A ++++ M QQ ++++Q+ATA HEM+ TA +VA +A 
Sbjct: 343 KRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQ 402

Query: 495 QAAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLAANSEKIGSVLEVIRG 554
            AA AA +AD+A++DG  V+  TT +I AL++ +  A+ +V+GL   +  I ++L+VI  
Sbjct: 403 GAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVIND 462

Query: 555 IAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETRLVIEHLQNGTEA 614
           IA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LAQRTQ+S  E R +IE LQ+G  A
Sbjct: 463 IADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASA 522

Query: 615 VVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASAAEEQSAVAEEINNN 674
           V  +M  S   A  +V++   A  +L++I  A+  ISDMN+QIASAAEEQS VAEEIN N
Sbjct: 523 VSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTN 582

Query: 675 VATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV 715
              I+D++  +++ A  ++   +       +Q  L++ F V
Sbjct: 583 TVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFIV 623