Pairwise Alignments

Query, 219 a.a., glutamine ABC transporter permease from Pseudomonas simiae WCS417

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  121 bits (304), Expect = 2e-32
 Identities = 65/198 (32%), Positives = 114/198 (57%), Gaps = 1/198 (0%)

Query: 19  GAAQTLSISFLSIAFSTVGGVLYGVLRTLNNRLINAVLRVYLELFRAIPVLVWLYLLFFG 78
           G A +L ++ ++I+ S   G++ G+ RT +NR+      +Y+EL R  P+++ ++ ++F 
Sbjct: 389 GLAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFF 448

Query: 79  LPIFFGLSLPSFWCAVLVLSLWGASEVGEVVRGALHSLPRGQREAGLSIGLSDPQLYGYV 138
           +P+ F      FW A + L+L+  + + E+VR  + ++P GQ EA  S GL+  Q    +
Sbjct: 449 IPVLFNTFFNVFWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMRRI 508

Query: 139 LLPQALKRMTPPTLNVYTRIIKTSSLAVLIGVVDVIKVGQQIIERTYESVL-IYGVLFLF 197
           +LPQALK+M P  +  +  I K +SLA ++GV+++  V Q I  R     + IYG +   
Sbjct: 509 ILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLELTFVAQGINNRLMVYPMEIYGTVAFL 568

Query: 198 FFFICYPLSAASKVLERR 215
           +F  C+ +S  +  LERR
Sbjct: 569 YFICCWSMSVYAARLERR 586



 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 23/212 (10%)

Query: 5   GLELLWVSLPQLGKGAAQTLSISFLSIAFSTVGGVLYGVLRTLNNRLINAVLRVYLELFR 64
           GLE+L        KG   T+ IS +S A +   G + G+ R      +       +E FR
Sbjct: 54  GLEIL--------KGLGVTVRISLISSALALGLGTVLGIARLSLFAPLRLTATAVVEFFR 105

Query: 65  AIPVLVWLYLLFFGLPIFFGLSLPS--------FWCAVLVLSLWGASEVGEVVRGALHSL 116
             P+LV L+  +F  P     ++          FWCA + LS++ ++ + EV+R  L S+
Sbjct: 106 NTPLLVQLFFWYFAFPAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSI 165

Query: 117 PRGQREAGLSIGLSDPQLYGYVLLPQALKRMTPPTLNVYTRIIKTSSLAVLIGVVDVIKV 176
           P+G  EA  S GL+  Q+   ++LP A + + PP  + +   +K SSLA+++GV ++   
Sbjct: 166 PKGLLEAAYSSGLNYVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQ 225

Query: 177 GQQI-------IERTYESVLIYGVLFLFFFFI 201
            QQ+        E T  + ++Y  L L   FI
Sbjct: 226 SQQVESLTFKGFEATSAATVLYLSLSLLISFI 257