Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 403 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  213 bits (541), Expect = 1e-59
 Identities = 130/391 (33%), Positives = 200/391 (51%), Gaps = 14/391 (3%)

Query: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPETGLK 62
           LTD   K  KP +  + + D  GL L V P+G K W +++   GK+   +IG++P+  L 
Sbjct: 6   LTDAKVKSVKPADRDWKLSDGGGLFLLVKPAGGKLWRWKYRLQGKENLFAIGSFPQVSLA 65

Query: 63  EARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQ-------TFRRVYDEWLAFRKGSI 115
           EAR  R++AR  +  G+ P   R++ K   + A  +       +F +V   +LA  K   
Sbjct: 66  EARTAREKARALVKQGIHPAHERQQVKQRNLEALAERKRAQESSFAKVAQAYLAEIKPVF 125

Query: 116 SPGTYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVF 175
           +  +YR   + +   + P      +  I    +  L+   +  G+ A A+ V+  +S +F
Sbjct: 126 AHSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWA-AIHVKGDLSAIF 184

Query: 176 SYAIATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALML 235
            +A+  G++EANP   +  +  ++   +    +   ++ +   A+R      +    L L
Sbjct: 185 EFAVVRGLVEANPIPSLRGLL-RVPASESKAAMTREQIQKFYQALRGYRGYPETALCLRL 243

Query: 236 MIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD 295
           +  TA RPGE   AEW E D + A+W  PAAKMK RR+H  PLS QAIA+L+ +  ITG 
Sbjct: 244 IALTACRPGEAADAEWEEFDFEDAVWRRPAAKMKARREHVSPLSAQAIAVLKDLQRITGG 303

Query: 296 KRYVFINRNST--TAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIER 353
            RY+F +R+    T P    YA   M    L    +PH +R  FST  N  G+  D IER
Sbjct: 304 GRYLFPHRSGKGFTTPNRLTYA---MRDMNLGRGTTPHCWRTTFSTWANENGFRPDAIER 360

Query: 354 QLAHADSSFIRDVYNHATYLDQRRGMMQEWA 384
           QLAH +S+ +R  YN A  LDQRR ++Q WA
Sbjct: 361 QLAHVESNKVRATYNKALLLDQRRSLLQAWA 391