Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 411 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  229 bits (585), Expect = 8e-65
 Identities = 131/390 (33%), Positives = 201/390 (51%), Gaps = 13/390 (3%)

Query: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLG--KQVRISIGTYPETG 60
           LT    + AKP++  Y + D   L   V PS  +SW FR+   G  K   +S GTYP+  
Sbjct: 5   LTARQIQTAKPKDKLYRLSDGGNLYFCVRPSNSRSWQFRYKRPGQDKITYLSFGTYPDMS 64

Query: 61  LKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTY 120
           L EAR +  EAR+ +A+G+DP+ ++ E+KA  I     TF+ V ++W A ++G I   T 
Sbjct: 65  LAEAREKALEARKQLADGIDPQLAKEEQKAKTITEQNATFKFVAEQWKATKEGQIKEKTL 124

Query: 121 RVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIA 180
                 + L   P LG   +  +     IA +R +E +G + T  +  Q M+++ +YA+ 
Sbjct: 125 EGNWRKLELYAFPKLGSIPVSKLTAPMAIAALRPIESQGLLETVKRTAQLMNEIMNYAVN 184

Query: 181 TGVIEANPTAEMHAVTEK-----MGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALML 235
           +GVI ANP A +  V +K     M   +PH      EM  ++  +         +  +  
Sbjct: 185 SGVIHANPLAGIRDVFKKHKVVHMKALQPH------EMHDLIRTVATANIQHVTRFLIEW 238

Query: 236 MIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD 295
            ++T  RP E   A W EID+   +W  P  +MKM R+H VPL+ Q +AILE++ PI+G 
Sbjct: 239 QLHTMVRPNEASGARWEEIDMVNKLWIIPKERMKMNREHVVPLTAQTLAILEAIKPISGH 298

Query: 296 KRYVFINRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQL 355
           + ++F +  +   P  +  AN  +   G     + HG R L ST +N +G+  D IE  L
Sbjct: 299 REFIFPSSRNPKVPTDSETANKALGRMGFKDRTTAHGLRALASTTLNEQGFEPDVIEAAL 358

Query: 356 AHADSSFIRDVYNHATYLDQRRGMMQEWAD 385
           AH D + IR  YN   YLD RR +M  W++
Sbjct: 359 AHTDKNQIRKAYNRTDYLDSRRKLMSWWSE 388