Pairwise Alignments

Query, 394 a.a., integrase from Pseudomonas simiae WCS417

Subject, 422 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  249 bits (635), Expect = 1e-70
 Identities = 128/385 (33%), Positives = 213/385 (55%), Gaps = 3/385 (0%)

Query: 3   LTDTAAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRF--TWLGKQVRISIGTYPETG 60
           LTD   K +KPRE  Y + D  GL L + P+G K W F +     GK+  +S G YP+  
Sbjct: 8   LTDKEIKASKPREKEYNLFDGDGLRLRIKPNGSKQWIFNYYRPTNGKRANLSFGMYPDIS 67

Query: 61  LKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPGTY 120
           L +AR     A+E IA G+DP+D R+ ++         TF  V  +W A ++  ++P   
Sbjct: 68  LLQARKSLLSAKELIAQGIDPQDDRKRQQQVHKEIHEHTFENVTKDWFAIKQNDVTPDYA 127

Query: 121 RVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYAIA 180
             I  ++ L + P + D+ + AI   ++I L++ +E +GS+ T  ++ QR+++V ++A  
Sbjct: 128 LDIWRSLELHIFPHISDKPVKAITAPEIIELLKPIEAKGSLETVKRLTQRLNEVMNFATN 187

Query: 181 TGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIYTA 240
            G+I+ANP   + A  +K  +       P +E+P +M+AI + +  +  +  L   ++T 
Sbjct: 188 CGLIQANPLTGIKAAFKKPKKENMAALTP-AELPELMSAIANASIKRTTRCLLEWQLHTM 246

Query: 241 SRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGDKRYVF 300
           +RP E   A W EI+ +  +WT PA +MK RR+H +PL+ Q +A+LE M PI+G + ++F
Sbjct: 247 TRPAEASGARWDEINWEEKVWTIPAERMKKRREHRIPLTEQMLALLEVMKPISGHRDFIF 306

Query: 301 INRNSTTAPIGTNYANNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQLAHADS 360
            +  +   P  +  AN  +   G  G    HG R L ST +N +G++ D +E  LAH D 
Sbjct: 307 PSDRAPKKPCNSQTANMALKRMGFAGRLVSHGLRSLASTTLNEQGFDPDLVESALAHVDD 366

Query: 361 SFIRDVYNHATYLDQRRGMMQEWAD 385
           + +R  YN   YL++R+ MM  W++
Sbjct: 367 NQVRSAYNRTDYLERRKPMMCWWSE 391