Pairwise Alignments

Query, 258 a.a., peptidoglycan-binding protein from Pseudomonas simiae WCS417

Subject, 365 a.a., peptidoglycan-binding LysM (RefSeq) from Shewanella loihica PV-4

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 54/238 (22%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 34  IQRFLLHNRILDTPQDLDNAPYIVAADAGRVLGANGERVHARGDLEPSQPNYGIFRRGKV 93
           IQ +L+ NR++D  +  D  P ++  ++        + ++ +G+L      +G++ +G+ 
Sbjct: 120 IQPYLVQNRVVDG-EWFDEQPMVMGGESESKHHVTDDVIYIQGELTLGD-KFGVYAKGRQ 177

Query: 94  YTDPQTRELLGINADDIGTARFVTAGDLTTLAVQRVTQEVRPGDRLLRAQTPVDPAAFAV 153
           + D ++ + LG+      + R + +G ++ + +    +E + G R+L  +     +A+ +
Sbjct: 178 FEDAESGDDLGLEVILTASGRVIESGPVSKVRLLSNMRETKAGYRVLPIEDDSLMSAYFM 237

Query: 154 TPATRFIKGQIIDIPKGVTQIGVLDAVTLNKGRRDGLVEGQLLSVIKAGATVRDSLTGTP 213
            P      G+++   K V ++G LD V +++G +DG+  G + S+ + GA V     G P
Sbjct: 238 -PKAATTPGKVLASEKDVREMGKLDVVYIDRGSQDGVETGHVFSIFRDGAEVVIDGDGKP 296

Query: 214 ---------------------TQLPDERAGTLLVFRTYEKLSYGLVLNASRPLAVMDR 250
                                T++PD   G L+VF+ ++++S GL+L   +P+ V D+
Sbjct: 297 VQPKDRSTYEELLASISSDNATKMPDIYRGKLMVFKVFDRVSLGLILINEKPVRVHDK 354