Pairwise Alignments

Query, 367 a.a., DNA polymerase III subunit beta from Pseudomonas simiae WCS417

Subject, 372 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  278 bits (710), Expect = 2e-79
 Identities = 158/373 (42%), Positives = 226/373 (60%), Gaps = 7/373 (1%)

Query: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60
           M  TI+R ALLK L  V  VVERR T+P+LSNV +       SL  TD+++E+V  V   
Sbjct: 1   MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60

Query: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVD--EAKLVVKAGRSRFTLSTLPANDFPT 118
             A PG  T PA  L DI + LP+ + +++  D  + +LV+KAGRSRF+LS LP  DFP 
Sbjct: 61  TLA-PGATTAPAHTLYDIVRKLPDGSQVELSYDGNDGQLVLKAGRSRFSLSCLPVEDFPA 119

Query: 119 VEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEG----IIRAVATDG 174
           +  G  S + SL  + LR LI+RT FA++ ++ RYYLNG+ L  +E     ++RAVATDG
Sbjct: 120 LSAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDG 179

Query: 175 HRLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFTFT 234
           HRLA   +    G      VIVPRK + EL +L+ E   ++++ L +  IR    E   T
Sbjct: 180 HRLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLT 239

Query: 235 SKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQ 294
           SKL+DG FPDYERV+P   DK++  D +   +A  R + +S EK R I++ +A G + + 
Sbjct: 240 SKLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLS 299

Query: 295 ANNPEQEEAEEEVGVDYNGGSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALVQESD 354
           A++P+   A EE+   Y   SLEIGFN  YLLD+LG +    VRL  +D+ S  ++++  
Sbjct: 300 ASSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEGGSVRLTFADAASPTVIRDVA 359

Query: 355 NDDSAYVVMPMRL 367
           +  + YV+MPMR+
Sbjct: 360 DASAVYVLMPMRV 372